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Glama

๐Ÿงช Want to see the background layer in action? Try the Public Health edition.

Metis_PH is a fully worked edition that ships with a pre-loaded knowledge layer (WHO guidance + epidemiology & methods references). Clone it to test the cited, library-grounded answers immediately โ€” without building a corpus first โ€” then bring the same setup to your own field here.


See it in action


Related MCP server: paperqa-mcp-server

Why researchers trust it

  • ๐Ÿ“š It cites your own sources. Knowledge answers are anchored in your indexed library, with document- and page-level citations โ€” not the model's guesses. Your library grounds the answer; it doesn't fence it in. Metis still brings in recent literature, guidelines and wider knowledge where they matter, and tells you which is which โ€” so anything worth citing that you don't have yet becomes a paper you can add.

  • ๐Ÿ”— It connects everything you know. Every paper, meeting transcript, idea, note, journal entry and task is linked to the rest of your work. The grant you write today surfaces a method paper from last year and a meeting note from March โ€” you never go looking; Metis brings it to you.

  • ๐Ÿง  It routes to the right expert. Ask in plain language, and Metis hands the work to the right one of 30+ specialist skills โ€” Librarian, Methods Coach, Writing Partner, Meeting Memory, Epidemiologist, Course Builder, and more.

  • ๐Ÿ” It improves itself. After every task it logs what worked and what fell short; each week it drafts improvements to its own behaviour and waits for your approval. Most MCP servers are static โ€” Metis gets sharper the longer you use it.

  • ๐Ÿšซ It refuses to invent. Ask about something that isn't in your library and Metis tells you so, instead of fabricating a plausible-sounding answer. (This grounding behaviour is covered by an automated test.)

  • ๐Ÿ”’ It stays on your machine. Local embeddings, local database, local files. Your papers, patient-adjacent data, and unpublished work never leave your computer.

๐ŸŽฅ See it in action above โ€” the dashboard, a tour of the tabs, the silent layer into Claude Desktop, and Metis improving its own work.

Easiest way to try it: install Claude Desktop and run the 3-step setup โ€” a demo workspace is pre-loaded, so you start with something to explore instead of a blank screen.


Who is this for?

๐Ÿ”ฌ I'm a researcher

No programming background needed. Install in minutes, start working immediately. Everything Metis does is explained in plain language.

โ†’ Get started (3 steps)

โš™๏ธ I'm a developer

Open-source, extensible, well-architected. Build domain packs, add agents, extend the MCP server, or deploy for your institution.

โ†’ Explore the architecture


What is Metis?

Metis is a research companion built on top of Claude that keeps your data on your own machine. It gives every AI conversation a persistent memory of your domain, your papers, your projects, and your working history. It routes your requests to the right specialist, does the work, records the result, and returns a plain answer โ€” without requiring you to prompt or configure anything.

The app runs on your machine and your data stays there โ€” your documents, notes, embeddings and memory never leave it. The reasoning is powered by Claude, so the text you choose to send for analysis goes to the Anthropic API; everything else is local. (See Data Protection for exactly what leaves your machine, and when.)

The short version: imagine an AI that already knew your field and your literature, connected every paper, meeting, idea and note you've captured, sent each request to the right specialist โ€” and got sharper about your work, and about itself, the longer you used it. That's Metis.


How it works

Metis is not a separate app you log into. It's a small service that runs quietly in the background and connects Claude to your research โ€” your papers, your memory, your projects.

  1. A background service (the "MCP server") starts with your computer. It's the bridge between Claude and your files โ€” you never interact with it directly.

  2. You talk to Metis through Claude, two ways:

    • Claude Desktop (easiest): open it and pick a Metis prompt (e.g. Metis, Metis Doctor) from the prompt menu โ€” or just ask.

    • Claude Code (terminal): type /metis followed by your request.

  3. You ask in plain language. Metis works out which of its 30+ specialists should handle it, does the work using your library and memory, and answers โ€” citing sources.

That's it. There's nothing to learn before you start; the dashboard is optional visibility on top of all this.


Design Philosophy

Every AI conversation starts from zero. You spend ten minutes re-explaining your context, and when the session ends, it's gone. Generic AI tools are powerful but stateless โ€” they know everything about the world and nothing about you.

Metis is built on one idea: the AI should know you. And it should keep getting better โ€” on its own.

Not just your name โ€” your domain, your literature, your projects, your preferred working style, your open questions, your meeting notes from last month, and the paper you added to your library yesterday. The longer you use Metis, the better every response gets. Not because the AI changes โ€” because Metis knows you better.

You don't need to follow developments in AI. Metis does that for you. Every week, Metis reviews its own performance across all your sessions, identifies where it could have done better, drafts improvements to its own behaviour, and waits for your approval before applying them. As better methods and models become available, those improvements are folded in the same way โ€” always proposed for your approval, never applied behind your back. As a researcher, you focus on your research. Metis handles keeping itself sharp.

The core mechanism is cross-pollination. Every time you capture an idea, add a paper, record a meeting, or complete a task, Metis connects it to everything else in your research universe. A paper you indexed a year ago surfaces when you're writing a grant today. A meeting note from March links to the idea you captured this morning. An open question from six months ago connects to a new paper that just came out. These connections happen automatically, in the background, without you having to search for them. This is what makes Metis a research companion rather than a search tool โ€” it thinks across your entire body of work so you don't have to hold it all in your head.

This is genuinely new ground. The individual components โ€” local language models, retrieval-augmented generation, agent routing, vector search โ€” all exist independently. What Metis presents is a coherent integration of all of them, purpose-built for the specific demands of research work: long timelines, sensitive data, deep literature, and knowledge that accumulates over years. A system that grows with you, and surfaces connections for you โ€” rather than starting from zero every session. To our knowledge, nothing quite like this exists as a unified, locally-running, researcher-facing system.

Three levels โ€” choose your entry point

Level

What it is

Best for

โ˜๏ธ MCP server only

A background service that runs alongside Claude. Persistent memory, session awareness, 30+ specialist agents โ€” no dashboard, no visible app.

Researchers who use Claude already and want it to know their work

๐Ÿ“Š With the dashboard

Full visibility across your research life โ€” papers, ideas, meetings, tasks, projects, all connected. Built for cross-pollination (ideas linking to literature) and brain off-loading (tracking leaving your head, entering the system).

Researchers who want a complete research operating environment

๐ŸŒ Metis OS

Connects to email, calendar, data systems, and institutional infrastructure โ€” a unified intelligence layer for your entire working environment.

The longer vision. Still in development.

Where things stand today: The MCP server, 30+ agents, and the 9-tab dashboard are fully operational and used daily. The one-click installer and the pre-loaded domain knowledge layer are still being refined. This is a working system โ€” not vaporware โ€” but it is also not finished. If something breaks, please open an issue. That feedback shapes what gets built next.


For Researchers

No programming background needed. Everything below is point-and-click or copy-paste.


How Metis is powered โ€” you choose (you won't burn API tokens just by using it)

Metis runs two ways, and you pick:

  • On your Claude subscription โ€” no API key, no per-token bills. This is the everyday path: you talk to Metis through Claude Desktop or Claude Code, and the dashboard's "โœฆ Update with Claude" / brainstorm buttons open Claude Desktop on your subscription. Most people use Metis entirely this way.

  • With an Anthropic API key โ€” only needed for things that run while you're not there: the scheduled morning scan and automated brief generation. Pay-per-token, typically a few cents a day.

  • With a local model (Ollama) โ€” optional, for fully-offline helper tasks (e.g. the data assistant).

The installer asks for an API key so automation can run, but you can skip it and use Metis on your subscription alone. Nothing in the interactive experience requires the API.


Install in 3 steps

Step 1 โ€” (Optional) Get an Anthropic API key โ€” only for unattended automation (free, 2 minutes)

  1. Go to console.anthropic.com and create an account.

  2. Click API Keys โ†’ Create Key. Copy the key (it starts with sk-ant-โ€ฆ).

  3. Keep that tab open โ€” the installer will ask for it once.

The key stays on your computer. It is never uploaded or shared.


Windows

โฌ‡ Download MetisSetup.exe

Double-click the installer. The wizard walks you through:

  1. Full or AI only โ€” Full gives you the AI assistant + 9-tab research dashboard (~15 min). AI only is faster (~5 min) and you can add the dashboard later.

  2. Your projects โ€” Tell Metis what you're working on. It creates a tracking record for each project, writes a context file into the project folder, and registers it in Claude Desktop automatically.

  3. Demo workspace โ€” Pre-loads realistic example projects, meetings, literature, and tasks so you can explore every feature immediately. Recommended for first-time users.

  4. API key โ€” Paste it once.

Everything else is automatic. Claude Desktop opens at the end with Metis ready to go.

Requirements: Windows 10 or 11 ยท Internet connection ยท API key


macOS or Linux

Open Terminal and paste:

bash <(curl -fsSL https://raw.githubusercontent.com/SVerITG/Metis_PH/main/system/mcp-server/setup-mcp.sh)

The script asks two questions (Full or AI only, demo workspace) and does the rest. Registers Metis with Claude Desktop and Claude Code automatically. Works on Ubuntu 20/22/24, Debian, and macOS.

Requirements: Python 3.10โ€“3.13. The installer prefers uv (which downloads its own Python 3.12 โ€” no system packages needed). If uv isn't available it falls back to your system Python; on a bare system you may need sudo apt install python3-venv. Very new Python (3.14+) isn't supported yet โ€” some packages don't publish wheels for it. If you hit "ensurepip is not available", install uv (the line above) or python3-venv and re-run.


After installation โ€” API key and updating

API key (optional): Copy system/.env.example to system/.env and add your key, or the installer will prompt you. The key enables automated features (morning briefs, scheduled scans); interactive use through Claude works without it.

Updating after git pull: The MCP server runs from a local copy of the source (not the repo directly). After pulling new code, re-sync with:

bash system/mcp-server/setup-mcp.sh --update

This re-copies the source, reinstalls the package, and applies migrations โ€” without re-running the full wizard.

Moved the Metis folder? Update the marker file at ~/.local/share/metis-mcp/.metis-rc-root with the new path, or re-run the installer.


MCP client configuration

The installer registers Metis with Claude Desktop and Claude Code automatically โ€” you normally don't need to edit any config by hand. The blocks below are for reference (and for MCP directories): they show how the metis-rc server is wired in.

Metis is not a one-line npx/uvx server. Run the installer first โ€” it builds the local virtual environment, initialises the database, and generates the launch script (run.sh) the configs below point to.

Step 0 โ€” install (builds the venv + DB, generates run.sh):

bash system/mcp-server/setup-mcp.sh

Claude Code (any OS) โ€” done for you by the installer, or add it manually:

claude mcp add metis-rc ~/.local/share/metis-mcp/run.sh

Claude Desktop โ€” macOS โ€” in ~/Library/Application Support/Claude/claude_desktop_config.json:

{
  "mcpServers": {
    "metis-rc": {
      "command": "bash",
      "args": ["/Users/<you>/.local/share/metis-mcp/run.sh"]
    }
  }
}

Claude Desktop โ€” Linux (native) โ€” in ~/.config/Claude/claude_desktop_config.json:

{
  "mcpServers": {
    "metis-rc": {
      "command": "bash",
      "args": ["/home/<you>/.local/share/metis-mcp/run.sh"]
    }
  }
}

Claude Desktop โ€” Windows + WSL โ€” in %APPDATA%\Claude\claude_desktop_config.json:

{
  "mcpServers": {
    "metis-rc": {
      "command": "wsl",
      "args": ["-e", "/home/<you>/.local/share/metis-mcp/run.sh"]
    }
  }
}

Replace <you> with your username. The generated run.sh resolves METIS_RC_ROOT from a marker file at runtime โ€” no hardcoded paths. No API key is required to run the server itself.


What you get on day one

Feature

What it does

30+ specialist agents

Librarian, Epidemiologist, Methods Coach, Writing Partner, Meeting Memory, Course Builder, Career Coach, Critic, and more โ€” each an expert in their domain

Grounded answers

Every knowledge question is automatically answered from your own indexed document library with page-level citations โ€” not AI guesses

Library management

Import PDFs, sync Zotero or Mendeley, ask "what do my papers say about X?" โ€” cited answers from your own library

Morning intelligence brief

Every morning: new papers on your exact research topics, field news, surveillance alerts, and a focus recommendation โ€” fully personalised

Live meeting assistant

Follow along in real time, or paste a transcript โ€” get structured notes, action items, and project cross-references automatically

Project tracking

Every project gets a tracking record, a context file in its folder, and integration with Claude Desktop. The Update button scans all your project folders for activity.

Voice capture

Record anywhere, transcribe locally (no API, no upload), route to ideas, journal, or notes

9-tab dashboard

Today ยท News ยท Knowledge ยท Meetings ยท Learning ยท Work ยท Thinking ยท Teach ยท Metis โ€” all live, all local

Data protection

Six security layers + the /safe-analysis workflow. Sensitive data is detected and held back before it reaches the AI, and the recommended pattern keeps raw data on your machine entirely โ€” you share only derived metadata.

Cross-pollination

Every idea, paper, meeting, and task is automatically connected to everything else in your research universe. Metis surfaces links across time โ€” a paper from last year, a meeting note from March, a question you logged at a conference โ€” without you searching for any of it.

Token tracking

Every agent run shows exactly what it cost โ€” which specialist was used, how many tokens, what model. The dashboard Today tab has a live token pulse so you always know your daily usage. Most daily tasks stay under a few cents.

Tool subset loading

Metis registers 210+ MCP tools, but exposing all of them to Claude on every session wastes context. By default, ~80 everyday tools load immediately; the rest are retrieved on demand via find_tools() / load_tool_group() (progressive disclosure). Each tool definition costs tokens; loading fewer means more room for actual work and lower per-session cost. Disable with METIS_TOOL_SEARCH=0 to load all tools.

Metis evolves โ€” you don't have to

Every week, Metis reviews its own session logs, identifies where it underperformed, and drafts behaviour improvements. You approve or reject them โ€” nothing changes without your sign-off. New capabilities are folded in the same way. You focus on your research; Metis keeps itself sharp.

Grows with you

Every agent run adds to your profile. A question asked after six months of use gets a meaningfully better answer than the same question on day one โ€” not because the AI changed, but because Metis knows you better.


Key Workflows


Morning

Wake up
  โ””โ”€ Metis scanned overnight
       โ”œโ”€ New papers on your configured research topics
       โ”œโ”€ Surveillance alerts and field news
       โ”œโ”€ Tasks due today, overdue items
       โ””โ”€ Suggested daily focus based on your open projects
           โ””โ”€ Open dashboard โ†’ read morning brief โ†’ start work

Literature

New paper (PDF / DOI / Zotero / Mendeley import)
  โ””โ”€ Librarian indexes it
       โ”œโ”€ Added to knowledge graph
       โ”œโ”€ Cross-pollinated with existing papers, past ideas, meeting notes
       โ””โ”€ Available for cited semantic search immediately
           โ””โ”€ Ask: "What do my papers say about X?"
                โ””โ”€ Answered with inline citations from your own library

Meetings

Meeting ends
  โ”œโ”€ Paste transcript (Teams / Zoom / any audio file)
  โ””โ”€ Meeting Memory agent processes it
       โ”œโ”€ Structured notes with context
       โ”œโ”€ Action items: who does what, by when
       โ”œโ”€ Cross-references to your projects and open questions
       โ””โ”€ Follow-up tasks auto-added to Work tab

Ideas and writing

Idea surfaces
  โ””โ”€ Ctrl+K โ†’ capture instantly (i: idea ยท n: note ยท t: task ยท q: question)
       โ””โ”€ Metis cross-pollinates immediately
            โ””โ”€ Related papers + past ideas surfaced automatically
                 โ””โ”€ Writing Partner โ†’ draft ยท Librarian โ†’ sources ยท Methods Coach โ†’ check argument

Teaching and courses

Course topic defined
  โ””โ”€ Course Builder
       โ”œโ”€ Generates lessons, slides, assessments, question banks
       โ”œโ”€ Flags new papers relevant to your course automatically
       โ”œโ”€ Gap analysis against current literature
       โ””โ”€ Spaced repetition for your own knowledge maintenance

The Dashboard

The 9-tab dashboard runs locally at http://127.0.0.1:8080. No account, no cloud, no subscription.

Metis dashboard โ€” Today tab

The Today tab โ€” morning briefing, active project, progress, news radar, and quick stats. Everything personalised to your research domain.


Tab

What it does

Today

Morning brief, priority task queue, news rail, quick capture (Ctrl+K)

News

Field news, surveillance alerts and RSS signals relevant to your work

Knowledge

Semantic PDF search, literature cards, knowledge graph, coverage gap analysis

Meetings

Live assistant, transcript import, action items, cross-references

Learning

Course progress, spaced repetition, competency map

Work

Tasks, project cards, activity tracking, one-click open in VS Code / RStudio / Claude โ€” with a Board view (week ahead ยท intentions ยท project pipeline)

Thinking

Idea capture, cross-pollination, brainstorm launcher, open questions tracker

Teach

Course Builder, literature alerts, lesson generation, student-facing content

Metis

Agent run history, self-improvement proposals, system health, identity card


How Metis Knows You

When you first install Metis, a setup wizard walks you through your profile:

research domain ยท specific interests ยท active projects ยท working style ยท tools you use ยท data sensitivity level

This creates your identity card โ€” a living profile that every agent reads before responding to you. It grows over time. Every session adds context. Every idea you capture tells Metis what you're thinking about.

A question asked after six months of use gets a meaningfully better answer than the same question on day one โ€” not because the AI changed, but because Metis knows you better.


Data Protection

Researchers handle sensitive data. Most AI tools don't take that seriously.

Patient data, embargoed results, unpublished findings โ€” these should never leave your machine. Metis was designed with this in mind from the start.

What leaves your machine (and when):

Service

What

When

Optional?

Anthropic Claude API

Text you send for analysis

On demand

Required for AI

PubMed / OpenAlex

Your research search keywords

Daily morning scan

Yes

Zotero

Library metadata (titles, abstracts, tags)

Daily sync

Yes

CrossRef

DOI queries

On demand

Yes

HuggingFace

Model name only โ€” downloads embedding models

First run

Yes

Everything else โ€” your documents, voice recordings, PDF text, meeting notes, patient-adjacent data โ€” stays on disk.

Security layers:

Layer

What it does

Pre-tool hook

Checks every tool call for injection attempts and restricted paths; peeks at a data file's header locally before it's read and asks you to confirm before individual-level data is loaded into the conversation

PII detection

11 checks, 4-level classification. Sensitive data is classified and refused at pipeline entry

Injection probe

Detects prompt injection in external content (papers, transcripts)

Constitution

14 machine-readable rules applied to every deep agent run

Red lines

5 non-overridable rules enforced at code level โ€” no override possible

AES-256 encryption

All backups encrypted at rest

The recommended pattern for sensitive data: send code, not data.

The strongest protection isn't a scanner โ€” it's never putting the raw data in a prompt at all. Metis is built for this. Ask it for an analysis script (R or Python); you run it on your own machine against your real data; and only the derived outputs โ€” variable names, value counts, summary tables, model coefficients, a data dictionary โ€” come back to Metis. Claude reasons over the shape of your data, never the records.

Your real dataset (patient rows)         โ”€โ”€ stays on your machine, never sent โ”€โ”€โ”
        โ”‚ you run Metis's R/Python script locally                               โ”‚
        โ–ผ                                                                       โ”‚
Derived metadata (column names, unique values, Table 1, model summary) โ”€โ”€ safe to share โ”€โ”€โ–บ Metis
        โ”‚                                                                       โ”‚
        โ–ผ                                                                       โ”‚
Metis builds the dashboard / writes the methods / interprets the model โ—„โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”˜

This is exactly how the dashboards and analyses in our own work were built: the raw surveillance data never left the machine, yet Metis could profile it, name every variable, list unique values, and generate a full dashboard.

Just run /safe-analysis (Claude Code or Claude Desktop) and Metis walks you through it end-to-end โ€” it proposes the local script, tells you exactly which metadata to paste back, and never asks for raw rows. Two backstops sit underneath: the pre-tool hook peeks at a data file's header locally and asks before any individual-level data is read into the conversation, and the Data Guardian (PII scan + 4-level classification at pipeline entry) catches sensitive content that slips into a prompt anyway. With the pattern above, neither usually has to fire.


How Metis Stays Current โ€” So You Don't Have To

AI is moving fast. New models, new capabilities, new research tools appear every month. Most researchers don't have time to follow it. Metis is designed to handle this for you.

After every agent run, Metis logs a reflexion โ€” what went well, what fell short, what context was missing. Every week it aggregates these into themes. Every week it drafts behaviour improvements with a clear rationale. You review the proposals in the Metis tab โ€” one click to approve, reject, or edit โ€” and the approved changes are written to disk.

This means Metis gets better at working with you specifically, week after week. It also means that as new AI developments become available and get integrated into Metis, you receive the improvements without having to do anything. Your job is your research. Metis's job is to stay sharp.

The self-improvement loop in detail:

  1. After every agent run โ€” reflexion logged: what went well, what could improve, what was missing

  2. Weekly โ€” themes extracted across all sessions; patterns identified

  3. Proposal drafted โ€” a concrete proposed change to agent behaviour, with reasoning

  4. You review in the Metis tab โ€” approve, reject, or edit before anything applies

  5. Applied with backup โ€” the update is written with a timestamped rollback point

No change to Metis's behaviour ever happens without your explicit approval. The system proposes; you decide.


For Developers

This section assumes familiarity with Python, Git, and the command line.


Architecture

flowchart LR
    U([Researcher])
    subgraph Harness["AI Harness (Claude Code / Desktop)"]
        METIS[Metis\nrouter agent]
        AGENTS[Specialist agents\n30+ agents]
        WATCHERS{{Watchers\nData Guardian ยท Cybersecurity}}
    end
    subgraph Platform
        MCP[MCP Server\n210+ tools\nFastMCP]
        DASH[Dashboard\nFastAPI + HTMX]
        DB[(SQLite\nWAL mode)]
    end
    subgraph Memory
        EPIS[Episodic]
        SEM[Semantic\nvector search]
        REFLEX[Reflexion log]
    end
    Skills[/CLI Skills\n/metis ยท /librarian ยท โ€ฆ/]

    U -->|asks| METIS
    U -->|clicks| DASH
    METIS -->|routes to| AGENTS
    AGENTS -->|uses| MCP
    MCP --- DB
    DASH --- DB
    WATCHERS -.guards.-> AGENTS
    AGENTS -->|writes| REFLEX
    REFLEX -->|proposes edits to| AGENTS
    MCP --- Memory
    Skills --> METIS

    style WATCHERS fill:#fff4e6,stroke:#9a7b3c
    style REFLEX fill:#eef4f1,stroke:#2d4a3a,stroke-dasharray:3 3

Stack

Layer

Technology

AI harness

Claude Code, Claude Desktop (primary); Gemini (experimental)

MCP server

Python 3.10+, FastMCP, runs in local venv

Dashboard

FastAPI + HTMX + Jinja2 โ€” no JavaScript framework

Database

SQLite WAL mode, 65 tables

Vector memory

sqlite-vec + nomic-embed-text-v1.5-Q (768 dims, local ONNX)

Semantic PDF search

sqlite-vec โ€” local PDF chunk index, no external API

Host OS

Windows + WSL2 (Ubuntu 20/22/24) ยท macOS ยท Linux


Memory โ€” 5 layers

Layer

What it stores

Episodic

Session events and observations (discovery ยท decision ยท implementation ยท issue)

Semantic

Vector-indexed content (sqlite-vec + nomic-embed-text-v1.5-Q, 768 dims)

Procedural

Skill files and agent contracts โ€” the agent's persistent behaviour

Working

Active session context and current project focus

Reflexive

Reflexion log and improvement proposals


Knowledge Layer & Grounded Answers (RAG)

When you ask a knowledge-intensive question, Metis retrieves relevant passages from your indexed document library before the specialist agent answers. The agent grounds its response in what it can read from your library โ€” not only what it was trained to recall.

You ask Methods Coach:
"Which variance estimator should I use for my Poisson MLM with overdispersion?"

Metis retrieves before routing:
  โ†’ Leyland (2020) Multilevel Modelling for Public Health, p.142 โ€” score 0.87
  โ†’ Bates lme4 vignette, p.28 โ€” score 0.71

Methods Coach answers grounded in those passages, citing both sources.

Component

Details

Embedding model

nomic-embed-text-v1.5-Q โ€” 768-dim, ONNX, fully local

Vector store

sqlite-vec virtual table inside Metis SQLite database

Chunking

3,200-character chunks, 400-character overlap

Score threshold

Chunks below 0.4 similarity dropped before injection

Build your field's knowledge layer. On first setup, the wizard's research-background questionnaire briefs the Background Maker, which harvests, scrubs, and indexes your discipline's literature into the local RAG store โ€” so every agent answers from your corpus, cited. Grow it anytime with /background build <topic>.


Security Layers (detail)

  1. pre-tool-use.mjs โ€” 13 injection patterns, domain allowlist, path restrictions (every tool call)

  2. guardrails.py โ€” injection probe on all external content (papers, web, transcripts)

  3. safety.py โ€” 11 PII checks, 4-level classification, sensitive data refused at pipeline entry

  4. constitution.md โ€” 14 machine-readable rules for deep and chained agent runs

  5. red-lines.md โ€” 5 non-overridable rules enforced at code level


Token Efficiency

  • Model routing โ€” Haiku for triage/summaries, Sonnet for most work, Opus only for deep reasoning; most daily usage never touches Opus

  • Surgical context assembly โ€” each agent gets only the context relevant to its task, not full history

  • Max-turns guardrail โ€” stops at 20 turns, prompts /clear

  • Session handoff โ€” under 3 KB state capture at session end; no re-paying for context already established

  • Token pulse widget โ€” real-time usage visible in the dashboard


Cross-AI Support

Harness

Status

Claude Code

โœ… Primary โ€” full MCP + skills + hooks

Claude Desktop

โœ… Primary โ€” full MCP + memory; no CLI skills

Gemini 2.0+

๐Ÿ”ฌ Experimental

OpenAI / Cursor

๐ŸŸก Partial โ€” MCP tools only


Installation Options


Option 1 โ€” Single command (Linux, macOS, WSL)

bash <(curl -fsSL https://raw.githubusercontent.com/SVerITG/Metis_PH/main/system/mcp-server/setup-mcp.sh)

Detects Ubuntu 20/22/24, Debian, macOS Homebrew. Creates venv, installs all dependencies, registers with Claude Code and Claude Desktop. Idempotent โ€” safe to re-run.

# Profile overrides (skip the interactive menu):
METIS_PROFILE=light    bash <(curl -fsSL ...)   # MCP server only (~5 min)
METIS_PROFILE=standard bash <(curl -fsSL ...)   # MCP + dashboard (~15 min)
METIS_PROFILE=full     bash <(curl -fsSL ...)   # Standard + scheduler (~25 min)

Option 2 โ€” Clone and install (any platform)

git clone https://github.com/SVerITG/Metis_PH.git
cd Metis_PH/system/mcp-server
bash setup-mcp.sh

Option 3 โ€” Manual

git clone https://github.com/SVerITG/Metis_PH.git
cd Metis_PH/system/mcp-server
python3 -m venv .venv && source .venv/bin/activate
pip install -e "."

export METIS_RC_ROOT="$(pwd)/../.."
export ANTHROPIC_API_KEY="sk-ant-..."

python -m metis_mcp.server          # MCP server
cd ../app-py && bash run.sh         # Dashboard โ†’ http://127.0.0.1:8080

Option 4 โ€” Docker (platform test matrix)

# Full platform test โ€” Ubuntu 24/22 + Debian in parallel
docker compose -f system/install/docker/docker-compose.test.yml up --build

# Production stack
docker compose -f system/install/docker/docker-compose.yml up -d

Register with Claude Code

~/.claude/settings.json:

{
  "mcpServers": {
    "metis-rc": {
      "command": "/home/<username>/.local/share/metis-mcp/run.sh"
    }
  }
}

Register with Claude Desktop (Windows + WSL)

%APPDATA%\Claude\claude_desktop_config.json:

{
  "mcpServers": {
    "metis-rc": {
      "command": "wsl.exe",
      "args": ["-e", "bash", "/home/<username>/.local/share/metis-mcp/run.sh"]
    }
  }
}

Configuration

File

Controls

system/config/user-config.yaml

Domain, interests, style โ€” generated by setup wizard

system/config/constitution.md

14 rules applied to every deep/chain run

system/config/red-lines.md

5 non-overridable rules

system/config/token-guardrails.md

Model routing, handoff thresholds

agents/<name>/skill.md

Behavioural contract per agent โ€” directly editable

.claude/hooks/pre-tool-use.mjs

Security gate on all tool calls


Dependencies

Package

Purpose

mcp, fastmcp

MCP protocol

fastapi, uvicorn, starlette

Dashboard

sqlite-vec

Local vector search

onnxruntime, tokenizers

Local embeddings (no API)

feedparser

RSS feed parsing

pyyaml

User config

httpx

Async HTTP

pandas, openpyxl, pyreadstat

Data analyst tools

cryptography

AES-256-GCM backup encryption

pyzotero

Zotero sync

bibtexparser

Mendeley BibTeX import

anthropic

Claude API


Editions and Roadmap

Metis ships in distinct editions โ€” a domain-agnostic base shell, and domain packs that add field-specific content on top.

Repository

Status

What it is

Metis

โœ… Live (v1.0)

Domain-agnostic base shell. Full architecture, no domain content. Clone this to build your own edition.

Metis_PH

โœ… Live (v1.0, this repo)

Public Health & Epidemiology โ€” MCP server, 30+ agents, dashboard, knowledge layer

Metis_BM

๐Ÿงฌ Planned

Biomedical Sciences

Metis_CL

๐Ÿฅ Planned

Clinical Sciences

Metis [Community]

๐ŸŒ Open

Domain packs for other research fields โ€” contributions welcome

Metis Institute Edition

๐Ÿ› Future

Multi-user, shared knowledge base, institutional deployment

What's in each domain edition: pre-configured journals + RSS feeds ยท specialist agents ยท domain ontology ยท curated background knowledge library

Want to build a domain pack? Fork Metis, add your field's knowledge library, agents, and RSS feeds, and open a PR.

Course Packages (Coming Soon)

Standalone course packages you can drop into any Metis installation:

Package

What it covers

Sampling Strategies

Probability and non-probability sampling, sample size, complex survey designs, weighted estimation

Spatial Epidemiology

Spatial autocorrelation, kernel density, SaTScan, LISA, disease mapping in R and GeoDa

Genomic Surveillance

Pathogen sequencing in public health, phylogenetics, WGS pipelines, Nextstrain

Open an issue with label course-package to pilot or contribute.

Development Status

Area

Status

MCP server (210+ tools)

โœ… Operational, used daily

30+ specialist agents

โœ… Operational, used daily

9-tab dashboard

โœ… Operational, some features in active development

Windows .exe installer

๐Ÿ”ง In refinement

Docker images

โœ… Test matrix working

Domain knowledge layer (Metis_PH)

๐Ÿ”ง Actively being expanded

Automated daily tasks (APScheduler)

๐Ÿ“‹ Next

Test suite

๐Ÿ“‹ Next

Telegram capture bot

๐Ÿ“‹ Planned

Metis OS (calendar, email integration)

๐ŸŒ Future vision


Contributing

Metis is designed to grow beyond one domain and one researcher. Contributions are welcome โ€” especially from researchers who use it and know what's missing.

See CONTRIBUTING.md for detailed guidelines.

Most Wanted

Domain packs โ€” the most impactful contribution. A domain pack adds: key journals + RSS feeds ยท specialist agents ยท a domain ontology ยท a curated background library

Domain

Status

Public Health & Epidemiology

โœ… Included

Social Sciences

๐Ÿ”ฌ Planned

Biomedical / Clinical Research

๐Ÿ”ฌ Planned

Environmental Science

๐Ÿ”ฌ Planned

Economics and Development

๐Ÿ”ฌ Planned

Psychology and Behavioural Sciences

๐Ÿ”ฌ Planned

Education Research

๐Ÿ”ฌ Planned

Nursing and Allied Health

๐Ÿ”ฌ Planned

Other high-impact contributions:

  • Translations โ€” the wizard and skill files are English-only; translations into French, Dutch, Spanish, German would open Metis to many more researchers

  • Installer testing โ€” Windows .exe and PowerShell on managed machines, corporate environments, and varied hardware; reports of what works and what breaks are valuable

  • New agents and skills โ€” specialist agents for use cases not yet covered

  • Security verification โ€” independent review of the data-stays-local guarantees (what's kept on the machine vs. sent to the Claude API), PII detection, hook behaviour, and constitution enforcement; if you find a gap, open a private issue

  • Multi-AI support โ€” better Gemini and local model (Ollama) support, especially for offline research environments

  • Bug reports and UX feedback โ€” if something doesn't work for your workflow, say so


Changelog

Metis is under active development โ€” see the latest below. (Recent: verification with a hard gate on artifacts and a denominator on every report, focus surfaces you compose yourself, and specialists that carry your standing decisions.)

August 2026

What changed

Fact-checking became a mechanism instead of a convention โ€” a claim is now checked, not trusted. Two layers: a deterministic one (is the cited document indexed, does the page exist, do the figures and quoted strings actually appear on it, does the DOI resolve, is the paper retracted) and a judgement one (does the literature agree, are there qualifiers and caveats the summary dropped, has newer evidence arrived since). Conversation gets annotated; artifacts get a hard gate โ€” tools/verify_citations.py exits non-zero on a document that cites a page which does not support the claim. Nothing about it is a model guessing: the checker is deliberately less fallible than the thing it checks.

Every report now carries its denominator โ€” the coverage line ("18 of 187 citation-shaped items were checkable as written") is printed whether or not it flatters the result. A verification report that omits what it did not cover reads as a clean bill of health, which is worse than no report.

Fact-checking beyond citations โ€” ask about a specificity figure and Metis weighs the spread of reported values across your library, surfaces the qualifiers attached to each, notes what the abstract omitted, and checks whether more recent work has moved the number.

Focus areas โ€” surfaces you add yourself โ€” a focus is a subject you want to stay current on ("AI in health and epidemiology"), and it composes one page out of the parts Metis already has: news, reading, your notes and ideas, and a running overview. It owns a query, never content โ€” so archiving one leaves every note, idea and paper exactly where it was. Its lens is a conjunction of keyword groups (OR within, AND across), which is what stops "Can AI ever be conscious?" from landing on a health surface. The shelf holds three, and it refuses a fourth rather than quietly evicting one: which subject loses your attention is your call, not the software's.

The specialists got a memory โ€” routing to an expert is only worth doing if the expert remembers something. Standing decisions (how you want a dashboard built, how something should be written, what matters in your library) are now recorded once and threaded into that specialist's context on every request. 65 were mined out of past session summaries and attributed conservatively โ€” anything not confidently placeable becomes project-wide, because a wrong attribution hides a rule from the agent that needed it and clutters one that did not.

All 33 specialists are dispatchable โ€” each is registered as a real subagent with its own bound model, so the work runs in an isolated context and the model choice actually takes effect instead of being advice in a config file.

Ten silent faults from working across two computers โ€” the code syncs over OneDrive; the virtual environment, the database and the model cache do not. That gap produced ten failures with one cause: an embedding cache pinned to a path the model had never been copied to (fixed by treating a cache location as a search path, not a constant), a stale-install check that compared timestamps instead of contents, two owners of the same table definition, a ); inside a SQL comment that silently truncated a table and dropped its columns, and a restart script that waited on health instead of on the process actually restarting โ€” which alone caused three false diagnoses.

A briefing that doesn't repeat itself โ€” the daily brief rotates instead of restating yesterday, News was rebuilt around what happened (papers belong in the library, never the news feed), and research interests split into separate axes so a feed can be specific without being narrow.

The persona grows from what it knows โ€” presence now comes from recalled context rather than announced framing, plus a learned-lesson ledger and /metis-review for checking whether Metis is still pointed at the right things.

Backgrounds became portable packs โ€” see, switch, rebuild and finally remove a knowledge layer; point a layer at an external library (206 papers were unsearchable); pull institutional PDFs in through Zotero; and a new ph-foundations textbook layer, where the curriculum decides the pack rather than the reverse. Packs carry every folder their layer covers, and PH / methods / NTD ship separately.

Office and a plain JSON API โ€” a PowerPoint/Excel taskpane over an HTTPS bridge, decks that flow back into Metis on their own and honour your own template, and a JSON API over the brain for clients that are not Claude.

Memory you can read and close โ€” procedural memory was a number on a card; it is now readable. Decisions can be closed instead of restated forever. Notes search reaches both note stores. A document that lands now indexes itself. Metis volunteers a recorded procedure and remembers your answer.

A calendar you can plan in โ€” day, week and month views, with a course's remaining lessons layable into the plan.

AI in Public Health โ€” a full course โ€” 16 lessons, 97 questions, 106 cards, built around six pattern-recognition shapes and one governing question: what happens when it's wrong, and who finds out? Shipped with two new gates, because both properties had been silently broken: check_course_launch.py (every launch button opens the real course โ€” one used to open a GitHub repo, another a path that 404'd) and audit_quiz.py (position bias and length tells โ€” a first draft put 100% of correct answers in slot 1).

Front-page and surface repairs โ€” 79 open tasks were invisible behind a missing column; four Today panels were blank; three Teach routes returned an empty div while 11 courses sat in the database; meetings had no primary key, so their action items could never surface; every news brief had a NULL primary key and half rendered raw HTML as text.

Offline, updatable, and honest about dead code โ€” CDN assets vendored so the dashboard loads with no internet; update Metis from a button with a way back; and a standing detector for code that looks wired but never runs.

July 2026

What changed

The dashboard was never crashing โ€” it was deadlocked with no way back. A file-descriptor inheritance leak meant a child process held the lock file its parent had opened, so recovery was impossible rather than merely slow, and three separate silent faults meant nothing ever restarted it. This supersedes the earlier "it keeps crashing" story entirely.

Cross-pollination became ambient โ€” the README had promised for months that related work surfaces on its own. It now does: on the Today cockpit, across the library, and without being asked.

News is what happened; literature is what was published โ€” the two had been merged, so papers kept appearing in the news feed. It was a data-model problem (feeds carried no kind), not a display one, which is why relevance ranking had been amplifying it.

Spaced repetition actually works โ€” the last unkept README promise.

Action items from natural transcripts โ€” extraction from how people really talk, not from a structured template.

Planner merged into Work as a Board view โ€” 10 tabs to 9.

Zotero gained a write path โ€” push local papers up, not only pull down.

The app finally uses the design system it already had.

Mark-done and delete never worked โ€” task IDs were unquoted in the generated JavaScript.

Late June 2026

What changed

Learnable agent routing โ€” which specialist answers a request now comes from a routing database, not a hardcoded list: it reaches 21 of the specialist agents (was 10), matches on word boundaries (so a stray word can't drag a request to the wrong expert), and learns โ€” when something has no obvious owner, Metis can ask "should I always send this to the Epidemiologist, or just this once?" and remember your answer.

Personalization layer (it grows with you) โ€” Metis now keeps a record of your standing preferences and decisions โ€” coding style, citation format, methodology defaults, the papers and datasets you keep returning to โ€” and applies them on every request instead of asking again. Tell it once ("always use tidyverse style"), and it threads that into the context every time.

Living request loop โ€” every /metis request is now routed through the layers โ€” persona ยท your memory ยท your preferences ยท the right agent + tools โ€” and the answer is checked against them before it comes back, so Metis gets a little more yours with each use.

Security pass โ€” closed a reflected-XSS hole in search; broadened PII detection (international phone formats, household-precision GPS) and prompt-injection detection (more attack phrasings); all backed by repeatable probes.

Today surface โ€” editorial redesign โ€” the morning view was rebuilt as a briefing, not a dashboard: an always-open morning paragraph, your warmest active threads, three customizable focus items, and notes from the assistant.

Post-v1.0 โ€” June 2026

What changed

Code Repository โ€” a reproducibility / code-reuse layer: register scripts, data dictionaries (variable names, types, unique values) and dataset treatments, then scaffold_script rebuilds a new script from your previous work โ€” same names, paths, packages. Fills itself silently as the code-producing agents work.

Projects in the registry + cross-pollination โ€” project listing now reads the project registry (every project, not just folders on disk); brainstorms and cross-pollination now draw on your registered projects and notes, not only library/news.

Brainstorm + brief upgrades โ€” a brainstorm creativity dial (Grounded/Balanced/Bold) and a scoped menu (this work ยท a topic ยท mindmap ยท cluster) that hand off to Claude Desktop primed with your work; a Daily โ†” Weekly morning-brief toggle; an idea mindmap on the Reflection tab; and an "Improve Metis (OODA)" button on the Metis tab.

Sensitive-data workflow (/safe-analysis) โ€” a first-class "send code, not data" workflow: Metis writes a local analysis script, you run it on your machine, and only derived metadata (schema, value counts, summaries, model output) comes back. Available in Claude Code and Claude Desktop.

Data Guardian hardening โ€” the pipeline PII scanner now runs all 11 patterns (names, DOB, passport, medical record numbers, national ID numbers, case/registry identifiers, + the original five) through one shared scanner used by both the tool and the pipeline, so they can't drift; covered by a unit-test suite.

Pre-tool data-file guard โ€” before a Read/read_file, the security hook peeks at the file's header locally and asks for confirmation before individual-level data is loaded into the conversation.

Honest positioning โ€” dropped the "local-first/local AI" framing (reasoning runs on the Claude API); copy now states plainly that your data stays on your machine while reasoning uses Claude.

Desktop project-tracking + file-tracking fixes โ€” the Desktop router now registers tracked projects; repaired a recursion bug that had broken file tracking.

Post-v1.0 โ€” May 2026

What changed

Unified project intelligence system โ€” unlimited projects with categories and folder paths in all installer paths; CLAUDE.md written to each project folder; Claude Desktop auto-registration; activity scanner detects git commits, modified files, and todo completions; Claude Code stop hook reports active project to dashboard

Three-path intelligent setup wizard โ€” browser wizard (unlimited projects, categories), terminal wizard (Linux/macOS), and Inno Setup wizard (Windows .exe) all backed by Claude API persona generation

Docker test matrix โ€” Ubuntu 24/22 + Debian + light profile running in parallel; mandatory pre-release gate in Release Coordinator

Today surface restructure โ€” session handoff strip, 7-metric ledger, three-tier priority queue, 2ร—2 research quadrant layout, time-of-day adaptive morning brief

Metis real subagent orchestration โ€” Metis spawns real isolated subagents via the Agent tool, with independent token tracking

Release Coordinator โ€” proactive git guardian with status / commit / push / audit / test-containers commands

Scheduler fix โ€” library index job corrected (scan_literature_folder in content_scan module)

Knowledge surface โ€” unified search, coverage gap analysis, knowledge layer browser

v1.0 โ€” May 2026

First stable release. See system/config/release-notes-v1.0.md for full details.

What shipped

FastAPI + HTMX dashboard โ€” 9 tabs

34 specialist agents

MCP server โ€” 170+ registered tools

Windows installer (Inno Setup)

Statistics for Epidemiology course โ€” 12 lessons with spaced repetition

Startup eval suite + news freshness check

Auto-handoff brief at 80% context

AGPL-3.0 license

Earlier development (Phases 0โ€“9b)

Phase

What shipped

0โ€“5

MCP server, 34 agents, CLI skills, config wizard, SQLite (46 tables), 5-layer memory, knowledge graph, Zotero/Mendeley sync

6โ€“7

FastAPI + HTMX dashboard โ€” 9 tabs, live partials

8

Morning brief, news rail, meeting assistant, voice capture, PaperQA2 PDF search, cross-pollination, token guardrails

9

CSS design overhaul โ€” editorial layout, responsive grid, animation

9b

Self-improvement loop โ€” reflexion aggregation, proposal drafting, approval flow

M

Conversation memory โ€” session summaries in episodic memory, semantic search across past sessions


License

AGPL-3.0 for the codebase โ€” use, modify, and fork freely, but any version you run as a service or distribute must also be open-source under AGPL-3.0.

CC-BY-SA 4.0 for course content and learning materials.

Available Tools

213 tools
add_glossary_termMetis โ€” Add Glossary TermA

Add a glossary term, or update its definition if it already exists.

Maintains a personal glossary of field-specific terms and acronyms so
Metis can give consistent definitions across sessions. Upserts on the
term (an existing term keeps its created_at but takes the new definition).
Retrieve entries with get_glossary.

Args:
    term: The term, acronym, or phrase to define; serves as the unique key,
        so reusing an existing term overwrites its definition.
    definition: The definition text to store for this term.

Returns:
    A confirmation message naming the term that was added or updated.
ParametersJSON Schema
NameRequiredDescriptionDefault
termYes
definitionYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavior: upsert semantics (keeps created_at, overwrites definition) and return type (confirmation message). This is comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a clear summary followed by detailed args and returns. Each sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (2 string params) and the presence of an output schema, the description covers all needed context: upsert behavior, use case, and retrieval sibling. It is complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds meaning beyond the schema by explaining that 'term' is the unique key and 'definition' is the stored text. With 0% schema coverage, this is essential.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it adds or updates a glossary term, specifying the action and resource. It distinguishes from the retrieval sibling 'get_glossary' by mentioning retrieval separately.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use it (maintaining a personal glossary for consistent definitions) and explicitly describes the upsert behavior. It also directs to 'get_glossary' for retrieval, providing clear guidance on alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

add_journal_entryMetis โ€” Add Journal EntryA

Store a journal entry with auto-extracted mood and energy.

Args:
    content: The journal entry text.
    image_path: Optional path to an associated image.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
image_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description notes auto-extraction of mood and energy, but lacks details on side effects, idempotency, required permissions, or what the return value contains (output schema exists but not discussed).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise with no wasted words, efficiently conveying the tool's purpose and parameters in two lines plus an Args list.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

While the description covers the core function, it omits behavioral details like constraints on content length, persistence behavior, or post-storage results. Given the tool's simplicity, it is minimally adequate but has clear gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema coverage, the description provides succinct but clear explanations for both parameters (content text, optional image path), adding value beyond the schema names.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool stores a journal entry with auto-extracted mood and energy, distinguishing it from sibling add_* tools like add_memory_entry or add_glossary_term.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives (e.g., add_memory_entry or other logging tools). There is no mention of prerequisites or constraints.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

add_memory_entryMetis ยท Memory Curator โ€” Add Memory EntryA

Add a new memory entry to the memory palace.

Use this for a human-curated 'memory palace' note (title + summary + topics,
optionally saved as a markdown file). For machine/agent event logging use
store_episodic_memory; for a distilled concept/definition use
store_semantic_memory.

Inserts into the memory_entries table. If detail is provided, also writes
a markdown file under journal/{entry_type}s/.

Args:
    title: Short title for the entry.
    summary: One-paragraph summary, stored in the DB and shown in search.
    topics: Comma-separated topic tags, e.g. "metis-setup,mcp-server".
    entry_type: One of "session", "journal", "idea", "decision", or "topic".
    detail: Full markdown content for the optional .md file.
    computer: Hostname of the computer this entry is from (optional).

Returns:
    A single TextContent confirming the saved entry (title, generated ID,
    type, topics, and the markdown file path if one was written), or an
    error message if the database is missing or the write fails.
ParametersJSON Schema
NameRequiredDescriptionDefault
titleYes
detailNo
topicsYes
summaryYes
computerNo
entry_typeNojournal

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavioral traits. It explains that the tool inserts into a database table and optionally writes a markdown file, and describes the return value. It lacks details on permissions or side effects, but is generally transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with sections (purpose, usage, args, returns) and is front-loaded. It is slightly long but every sentence is informative, earning its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (6 parameters, 3 required) and the presence of an output schema, the description fully covers input semantics, behavior (database insert and optional file write), and return format. No gaps remain.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description adds comprehensive meaning for each parameter, including allowed values for 'entry_type', comma-separated format for 'topics', and the role of 'detail' in creating a markdown file. This goes well beyond the basic schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Add a new memory entry to the memory palace' with a specific verb and resource, and explicitly distinguishes itself from sibling tools 'store_episodic_memory' and 'store_semantic_memory'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly guides when to use this tool ('human-curated memory palace note') and when to use alternatives ('For machine/agent event logging use store_episodic_memory; for a distilled concept/definition use store_semantic_memory').

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

add_specialist_contextMetis โ€” Add Specialist ContextA

Add a specialist context to the user profile, or update it if it exists.

Specialist contexts tell Metis which domains the user works in so routing
and search can be tailored. This appends to specialist_contexts in
user-config.yaml (creating the file with defaults if absent); if a context
with the same name already exists, its description is updated instead of
duplicated. Related tools: toggle_context, list_contexts.

Args:
    name: Short label for the context, e.g. "Epidemiological dashboards";
        also the key used to detect and update an existing context.
    description: One or two sentences describing what this context covers.
    active_by_default: If True (default), the context is added to
        active_contexts immediately; if False, it is stored but left
        inactive (and removed from active_contexts if already present).

Returns:
    A confirmation message stating whether the context was added (and
    activated) or an existing one was updated.
ParametersJSON Schema
NameRequiredDescriptionDefault
nameYes
descriptionYes
active_by_defaultNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavioral traits: it modifies user-config.yaml, creates the file with defaults if absent, updates instead of duplicating on name match, and explains the active_by_default parameter's effect on activation state. The return value type is also specified.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is efficiently structured: opening sentence for purpose, explanatory paragraphs, a 'Related tools' line, then 'Args:' and 'Returns:' sections. Every sentence provides value, with no redundant or extraneous content.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has 3 parameters, no annotations, and an output schema, the description covers all necessary aspects: purpose, behavioral details, parameter semantics, and return value. It enables an agent to correctly select and invoke the tool without additional context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It thoroughly explains each parameter: name as short label and dedup key, description as one/two sentences, and active_by_default with behavior (immediate activation vs storage/inactivation). This adds critical meaning beyond the schema's title and default.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action (add or update) and the resource (specialist context). It distinguishes between adding and updating, and the context of routing/search tailoring provides specificity. The sibling tools list includes toggle_context and list_contexts, which helps differentiate.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use the tool (to add or update specialist contexts for tailoring) and mentions related tools (toggle_context, list_contexts). However, it does not explicitly state when not to use it or provide alternatives beyond listing related tools, leaving room for slight ambiguity.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

add_tracked_fileMetis โ€” Add Tracked FileA

Add a single file to the tracked-files list and start watching it.

Registers one file so Metis notices when it changes and can read it later
via read_file; tracked files surface on the dashboard's Planning tab. The
file's current modification time is recorded and watch is set on. Re-adding
an existing path updates it (and keeps the old label unless a new one is
given). To register a whole project at once, use connect_project_folder.

Args:
    path: Absolute path to the file to track; the file must exist or an
        error is returned.
    label: Optional category label for the file (default empty string);
        on re-add, an empty label leaves the existing label unchanged.

Returns:
    A confirmation message naming the tracked file (and its label, if any),
    or a "file not found" / error message.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes
labelNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations, but description covers key behaviors: records modification time, sets watch, re-add updates, file must exist, returns confirmation or error. No hidden side effects mentioned.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with summary, details, Args, Returns. Slightly verbose but adds necessary context. Efficient overall.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given output schema exists, description still clarifies return values. Covers prerequisites, re-add logic, alternative tool. Fully adequate for a simple file-tracking tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage 0%, so description adds full meaning: path must be absolute and exist, label is optional with default empty and on re-add empty label leaves old unchanged. Outperforms basic schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states 'Add a single file to the tracked-files list and start watching it.' Identifies specific verb, resource, and action. Distinguishes from sibling 'connect_project_folder' for bulk registration.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says when to use (register one file) and when not ('To register a whole project at once, use connect_project_folder'). Also explains re-adding behavior.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

add_user_topicMetis ยท News Radar โ€” Add User TopicC

Add a topic to track for new publications.

Args:
    topic: Topic name (unique).
    description: Optional description of what to look for.
ParametersJSON Schema
NameRequiredDescriptionDefault
topicYes
descriptionNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

C2.9/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavior. It states it adds a topic but does not mention whether duplicates are allowed (despite hinting at 'unique' in param doc), what side effects occur (e.g., triggers notifications), or what happens if the topic already exists. This lack of behavioral detail is a significant gap.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very short and front-loaded with the purpose, but it uses Python docstring style with 'Args:' which is unnecessary for JSON. It is concise but could be more efficiently structured without the docstring formatting, potentially adding a return description or behavior note.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has an output schema (not shown) and low complexity (2 params, no enums), the description is incomplete. It does not explain the return value, error conditions (e.g., duplicate topic), or the lifecycle of added topics. The tool's purpose is clear but operational details are missing for a complete understanding.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must add value. It only repeats parameter names with minimal context ('topic: Topic name (unique)', 'description: Optional description...'). The schema already contains required/default info; the description does not explain formats, constraints, or usage examples, adding little beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Add a topic to track for new publications.' It uses a specific verb ('Add') and resource ('topic'), and distinguishes from similar sibling tools like add_glossary_term or add_memory_entry by specifying the context of tracking new publications.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives (e.g., search or list tools). There is no mention of prerequisites, usage context, or when not to use it. The description is purely operational without contextual decision support.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

aggregate_reflexionsMetis โ€” Aggregate Reflexions ToolA

Theme recent reflexions per agent (Phase 9b).

Reads ``reflexion_log`` entries from the last ``days`` days (default 14)
and returns the top recurring 'could improve', 'missing context', and
'tool wishes' themes, ordered by busiest agent.

Pass ``agent_slug`` to limit the scope; leave blank for all agents.
ParametersJSON Schema
NameRequiredDescriptionDefault
daysNo
agent_slugNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, but the description clearly states it reads 'reflexion_log' entries (non-destructive) and returns aggregated themes. It does not contradict any annotations. Slight lack of mention of potential side effects, but none expected.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is relatively concise (3 sentences) and front-loaded with the core purpose. It could be slightly tighter but is clearly structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given an output schema exists, the description covers the input parameters, data source, time window, and output categories sufficiently. It does not need to detail return values.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description adds meaning: 'days' is time window (default 14 days), 'agent_slug' scopes to one agent or all. This compensates for the missing schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Theme') and resource ('recent reflexions per agent') with clear scope (Phase 9b). It distinguishes from siblings like 'consolidate_reflexions' by focusing on aggregation and thematic grouping.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use (to get top themes from recent reflexion logs) but does not explicitly mention when not to use or suggest alternatives among the many sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

analyze_scriptMetis ยท Software Engineer โ€” Analyze ScriptA

Parse one R or Python script and extract structured metadata.

Returns packages, file reads/writes, variable names, source dependencies,
and transform patterns โ€” all from regex parsing (no execution, no AST,
no data access).  The script's code is read but never sent to an LLM;
only the extracted metadata is returned.

Args:
    path: Absolute path to the script file (.R, .Rmd, .qmd, or .py).
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully carries the burden. It discloses the regex-based nature, no execution, no data access, and no LLM exposure. It does not cover error handling or side effects, but the output schema covers return values.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two short paragraphs plus an Args section. Every sentence adds value, with no redundancy or filler.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple one-parameter tool with an output schema, the description is complete. It explains the extraction method, limitations, and safety aspects, leaving no obvious gaps for the agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'path' has 0% schema description coverage, but the description adds crucial context: 'Absolute path to the script file (.R, .Rmd, .qmd, or .py).' This specifies format and absolute path requirement, adding significant value beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it parses R or Python scripts and extracts structured metadata. The verb 'parse' and resource 'script' are explicit, and it distinguishes itself from sibling tools by focusing on static analysis without execution.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explains that parsing is regex-based with no execution, no AST, no data access, and code is not sent to an LLM. This provides clear guidance on when to use the tool safely, though it doesn't explicitly list alternatives or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

anonymize_textMetis ยท Data Guardian โ€” Anonymize TextA

Scrub PII from text and return anonymized version + replacement map.

Replaces:
  - Patient/case IDs        โ†’ [PARTICIPANT_001]
  - GPS coordinates         โ†’ [GPS_001]
  - Belgian national IDs    โ†’ [NID_001]
  - Email addresses         โ†’ [EMAIL_001]
  - Phone numbers           โ†’ [PHONE_001]
  - Name-like tokens (opt.) โ†’ [NAME_001]

Args:
    content:        Text to anonymize.
    mode:           'full' โ€” replace; 'preview' โ€” mark without replacing.
    replace_names:  Also replace CAPITALIZED name-like tokens (heuristic).

Returns JSON with keys 'anonymized' (str) and 'replacements' (dict).
ParametersJSON Schema
NameRequiredDescriptionDefault
modeNofull
contentYes
replace_namesNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description fully bears the burden. It details the replacement behavior (list of PII types), modes ('full' vs 'preview'), and the optional name replacement heuristic. It also describes the output JSON structure, leaving no ambiguity about the tool's behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise yet comprehensive, using bullet points for replacements and clear sections for args. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has 3 parameters, an output schema, and no nested objects, the description covers all necessary aspects: what it does, how to use it (args), and what to expect (output JSON with 'anonymized' and 'replacements'). It is fully complete for an agent to select and invoke correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0% (no descriptions in schema). The description compensates by explaining all three parameters: content (text to anonymize), mode (full/preview), and replace_names (heuristic for CAPITALIZED tokens). It also explains the output format, adding significant value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Scrub PII from text and return anonymized version + replacement map.' It lists specific PII types and their replacements, distinguishing it from sibling tools like redact_data_file or diff_anonymization.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the tool's purpose and parameters (mode, replace_names) but does not explicitly state when to use this tool versus alternatives like redact_data_file or diff_anonymization. However, the context is clear enough for an agent to infer usage.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

apply_proposalMetis โ€” Apply Proposal ToolA

Apply a self-improvement proposal: writes the proposed change to disk.

The previous skill.md content is backed up alongside as
``skill.md.bak.<timestamp>`` so a revert is always possible. Updates the
proposal row to status='applied' with the applied_at timestamp and the
backup path.

Args:
    proposal_id: the id from skill_improvement_proposals.
ParametersJSON Schema
NameRequiredDescriptionDefault
proposal_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses the write-to-disk action, backup creation, and database update. However, it fails to mention whether the operation is reversible (backup implies some reversibility but not explicitly), required permissions, or behavior on invalid proposal_id. Some transparency, but gaps remain.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is three sentences plus an Args line, front-loaded with the primary action. Every sentence adds value: what it does, backup detail, database update, parameter meaning. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the existence of an output schema (not shown), the description covers the main effects: write, backup, status update. It does not explain error handling or state prerequisites, but for a single-parameter tool with clear purpose, it is largely sufficient. Minor completeness gaps leave room for improvement.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema provides 0% description coverage, so the description must compensate. It explains the parameter 'proposal_id' as 'the id from skill_improvement_proposals', giving context beyond the schema's bare type and title. This is helpful for agent understanding, though additional detail on validity constraints would improve it further.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Apply' and the resource 'self-improvement proposal', with specific actions: writes change to disk, backs up previous content, updates proposal row. This distinguishes it from sibling tools like 'propose_skill_improvement' (creation) and 'approve_proposal' (state change) by focusing on execution.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies the tool is used when a proposal is ready to be applied, but it does not explicitly state when to use it versus alternatives like 'approve_proposal' or 'reject_proposal'. No prerequisites or conditions for use are mentioned, leaving the agent to infer context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

approve_proposalMetis โ€” Approve ProposalA

Approve a pending skill improvement proposal and apply it.

Writes the proposed content to the agent's skill.md file and marks
the proposal as approved. Creates a backup of the current skill file first.

Args:
    proposal_id: The numeric ID from get_pending_proposals()
ParametersJSON Schema
NameRequiredDescriptionDefault
proposal_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses key behaviors: writes to skill.md, marks as approved, creates backup. No annotations provided, so description carries full burden. Could mention failure modes or return value, but output schema exists to cover that.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Four sentences plus an Args section. Every sentence provides necessary information without redundancy. Front-loaded with the core action.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (single required parameter, output schema exists), the description covers the essential action and side effects. Could mention that the proposal must be pending, but this is implied by the purpose.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Description adds meaning to the sole parameter 'proposal_id' by specifying it is 'The numeric ID from get_pending_proposals()', guiding the agent on how to obtain the correct value. Schema only says integer, so this adds significant value despite 0% schema description coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the verb 'approve' and the resource 'pending skill improvement proposal'. Distinguishes from siblings like 'reject_proposal' and 'propose_skill_improvement' by specifying that it applies the proposal by writing to skill.md and marking as approved.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description provides clear context that this tool is for approving proposals from get_pending_proposals() and mentions the backup creation. It doesn't explicitly say when to use vs alternatives, but the purpose is self-evident given the sibling tool names.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

archive_library_itemMetis ยท Librarian โ€” Archive Library ItemA

Archive a library item (mark as no longer active but keep in DB).

Sets status='archived' in library_seeded table. Item stays available
for search and cross-pollination but disappears from default view.

Args:
    relative_path: The relative_path primary key in library_seeded table.
ParametersJSON Schema
NameRequiredDescriptionDefault
relative_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It discloses the core behavior: sets status='archived', keeps in DB, affects default view but not search. It does not mention permissions, reversibility, or side effects, but for a simple archive operation the transparency is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three concise sentences plus an Args line. The first sentence states the core purpose, the second provides the SQL detail, and the third explains the effect. No wasted words; information is well-structured and front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given low complexity (one parameter, simple action) and the presence of an output schema, the description covers the key aspects: what happens to the item, its visibility, and the parameter meaning. Minor gaps like reversibility or permissions are not critical for this tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage, so the description must explain the parameter. It does so by stating that relative_path is the primary key in the library_seeded table, adding context beyond the parameter name. This is sufficient, though a format example could improve it.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Archive' and the resource 'library item,' explaining that it marks an item as no longer active but keeps it in the database. It distinguishes this from deletion (e.g., remove_library_item) by noting the item remains searchable and cross-pollinated.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the effect (disappears from default view, stays searchable) but does not explicitly state when to use this tool versus alternatives like remove_library_item or archive_project. The usage context is implied rather than directly guided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

archive_projectMetis โ€” Archive ProjectA

Archive a project โ€” marks it inactive but keeps all data.

Sets status='archived' in projects table. Project disappears from
active view but remains available for brainstorm context and search.

Args:
    project_id: The project_id to archive.
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It transparently describes that the project's status is set to 'archived', data is kept, and visibility changes. It does not mention side effects or reversibility, but the 'unarchive_project' sibling partially addresses that.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two sentences plus a parameter listing. All information is relevant and front-loaded. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the single parameter and existence of an output schema, the description covers the essential aspects: what the tool does, the effect on data availability, and the parameter. It is fully adequate for an agent to understand and invoke the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the description includes an 'Args' section that explains the required 'project_id' parameter. This adds meaning beyond the schema, though it could provide more detail (e.g., format or example).

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's action: 'Archive a project โ€” marks it inactive but keeps all data.' It uses a specific verb ('archive') and resource ('project'), and distinguishes itself from siblings like 'remove_project' and 'unarchive_project' by clarifying that data is preserved and the project remains available for context and search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the effect ('disappears from active view but remains available for brainstorm context and search'), implying when to use it. However, it does not explicitly state when not to use it or compare with alternatives like 'remove_project'. The guidance is clear but could be more explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

ask_libraryMetis ยท Librarian โ€” Ask LibraryA

Answer a question using the user's indexed PDF library via PaperQA2.

Searches the pre-built index (see index_library_pdfs()) and returns
a synthesised answer with citations from the source papers.

Args:
    question: Natural language question to answer from the library.
    top_k: Number of source passages to retrieve before synthesis (default 5).
    scope: Which index to query. "default" = full library. "ph_library" = PH background only.
           Build the index first with index_library_pdfs(scope=<scope>).
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNodefault
top_kNo
questionYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, description carries full burden. It discloses that the tool searches a pre-built index and returns synthesized citations, implying non-destructive read-only behavior. However, it doesn't explicitly state no side effects or permissions needed.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and front-loaded: one sentence for purpose, minimal parameter list. No filler, but could be slightly more structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given sibling tools and presence of output schema, description covers primary use case, dependency on index, and scope variants. Lacks details on return format but output schema handles that.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description's 'Args' section explains each parameter: question, top_k (default 5), and scope with concrete options (default, ph_library). Adds significant value beyond bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool answers a question using the user's indexed PDF library via PaperQA2, returning a synthesized answer with citations. It distinguishes from sibling tools like search_library by focusing on synthesis rather than raw retrieval.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides guidance on prerequisite (build index first with index_library_pdfs) and explains scope options. Could be stronger by explicitly listing when not to use, but gives adequate context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

assemble_brainstorm_contextMetis โ€” Assemble Brainstorm ContextA

Assemble context from multiple sources for brainstorming.

Gathers recent content from selected sources, respecting an 8000 char
limit per source. Returns assembled context string with source labels.

Args:
    sources: List of sources to include: "library", "meetings", "news", "ideas", "journal".
    date_filters: Optional dict with source-specific date filters, e.g. {"ideas": "2026-03-01"}.
ParametersJSON Schema
NameRequiredDescriptionDefault
sourcesYes
date_filtersNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Mentions 8000 char limit per source and returns assembled string with source labels, but does not explain what 'recent content' means, behavior when sources are empty, or default behavior when date_filters is null. With no annotations, more detail would improve transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and well-structured: one sentence for purpose, then clear details on char limit and output, then arg descriptions in docstring style. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given two params, no annotations, and an output schema, the description covers essential aspects: sources, char limit, date filters example. However, it lacks definition of 'recent' and default filtering behavior, which slightly reduces completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so description compensates well by explaining that sources is a list from a set of allowed values (library, meetings, news, ideas, journal) and that date_filters is an optional dict with source-specific date filters, including an example. Adds significant meaning beyond the schema structure.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the verb 'assemble' and the resource 'context from multiple sources for brainstorming'. Distinguishes from sibling tools like brainstorm_turn or get_brainstorm_session by focusing on gathering context from specific sources.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implies usage for brainstorming context assembly but does not explicitly state when to use versus alternatives like load_project_context or get_agent_context. No when-not-to-use guidance is provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

backup_dbMetis โ€” Backup DbA

Create a timestamped backup of the Metis SQLite database.

Uses SQLite's Online Backup API โ€” safe to run while the database is live.

Args:
    destination:       Directory path to write the backup into.
                       Defaults to metis/system/backups/.
    label:             Optional label appended to the filename, e.g. 'pre-upgrade'.
    extra_destination: Optional second directory for off-site / secondary copy.

Returns JSON with backup_path, size_kb, checksum (SHA-256), and elapsed_ms.
ParametersJSON Schema
NameRequiredDescriptionDefault
labelNo
destinationNo
extra_destinationNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses the use of SQLite's Online Backup API, safety for live databases, and return fields (backup_path, size_kb, checksum, elapsed_ms). This is more than basic transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, front-loaded with purpose, followed by a safety note and bulleted argument list. The return value description is included. Slightly verbose due to redundant argument list with schema, but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 3 optional parameters and no required ones, the description fully covers purpose, safe usage, parameter details, and return format. No obvious gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description provides clear explanations for all three parameters: destination (default path), label (filename appendix), and extra_destination (secondary copy). This adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description specifies the action (create), resource (timestamped backup), and context (Metis SQLite database). It clearly distinguishes from sibling tools like restore_db and verify_backup.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description states it is safe to run while the database is live, providing good context. However, it does not explicitly state when not to use or mention alternatives like encrypt_backup.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

brainstorm_turnMetis โ€” Brainstorm TurnA

Run one turn of a brainstorm session, returning relevant context.

Call this at the start of a brainstorm and after each steering action.
The tool fetches relevant ideas, notes, questions, and library notes so
you (the AI) can surface connections the user may not have considered.

Steering modes:
  expand    โ€” broaden; surface tangential connections
  focus     โ€” narrow; find the most relevant threads
  challenge โ€” find counter-arguments and weaknesses
  synthesize โ€” identify themes; propose a unifying framework
  connect   โ€” explicit cross-domain connections to library/literature

Args:
    topic:        The brainstorm topic or question.
    steering:     One of expand|focus|challenge|synthesize|connect.
    session_uuid: Pass the UUID from the previous turn to continue a session.
                  Omit to start a new session.
    turn_notes:   Optional free-text notes from the previous turn to log.

Returns JSON with: session_uuid, turn_number, context (ideas/notes/
questions/library), steering_prompts, and instructions for the AI.
ParametersJSON Schema
NameRequiredDescriptionDefault
topicYes
steeringNoexpand
turn_notesNo
session_uuidNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses that the tool fetches relevant ideas, notes, questions, and library notes, lists five steering modes with their meanings, explains session continuation via session_uuid, and describes the return format including session_uuid, turn_number, context, steering_prompts, and instructions. This is comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a summary sentence, usage instruction, enumerated steering modes, and a parameter list. Every sentence adds value, though the parameter list could be more concise. Overall, it's appropriately sized for a complex tool.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool complexity (iterative brainstorming with multiple steering modes) and the presence of an output schema (mentioned in description), the description is complete. It covers purpose, when to use, all parameters with semantics, steering modes, session management, and return value fields. No significant gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description fully explains each parameter: topic (the brainstorm topic), steering (with explicit list of allowed modes), session_uuid (continuation vs new session), and turn_notes (optional notes). This adds complete semantic meaning beyond the schema's minimal type definitions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Run one turn of a brainstorm session, returning relevant context.' It specifies the verb and resource, and distinguishes from sibling tools like get_brainstorm_session and save_brainstorm_output by focusing on iterative turns with steering modes.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicit guidance: 'Call this at the start of a brainstorm and after each steering action.' This clearly indicates when to use. While it doesn't explicitly list when not to use, the context makes it clear this is for iterative brainstorming, and siblings cover other phases.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

build_pdf_knowledge_dbMetis ยท Librarian โ€” Build Pdf Knowledge DbB

Index a knowledge database layer from PDFs into the semantic knowledge base.

Uses local nomic-embed-text-v1.5-Q (fastembed, ONNX) โ€” no API key required.
Each database is a named layer: 'ph-background', 'hat-specialist', 'epi-methods',
or any custom database slug created via create_knowledge_database().

Args:
    database:      Slug of the knowledge database to build (default: 'ph-background').
    force_rebuild: Re-index even files already indexed in this database.
ParametersJSON Schema
NameRequiredDescriptionDefault
databaseNoph-background
force_rebuildNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.1/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must cover behavior. It discloses use of local embeddings and no API key, and explains the force_rebuild parameter. However, it omits whether the tool creates databases, the scope of files indexed, potential resource usage, or side effects on existing data.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise, well-structured. Begins with core purpose, then model details, layer examples, and a clear Args block. No filler sentences.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists, return values are not needed. However, important context is missing: how PDFs are associated with a database, whether the database must exist beforehand, and any time/resource implications. Adequate but with gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage 0% but description compensates well: explains 'database' as a slug with defaults and examples, and 'force_rebuild' as re-indexing already indexed files. This adds significant meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it indexes a knowledge database layer from PDFs, using a local embedding model. It provides examples of database slugs and links to create_knowledge_database(), but does not explicitly differentiate from sibling tools like index_library_pdfs or index_pdf_library.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit when-to-use or when-not-to-use guidance. The mention of local model implies offline use, but there is no comparison to alternatives or prerequisites for custom databases.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

capture_ideaMetis โ€” Capture IdeaA

Store an idea in the SQLite ideas table.

Auto-extracts tags from content. Links to domains/projects if keywords match.
Unless `auto_cross_pollinate=False`, automatically surfaces up to 5 cross-
pollination matches from library / meetings / news / older ideas in the same
response โ€” so the user sees connections without a second tool call.

Args:
    content: The idea text.
    source: Where the idea came from (default "manual").
    image_path: Optional path to an associated image.
    auto_cross_pollinate: When True (default), include connection matches in the response.
ParametersJSON Schema
NameRequiredDescriptionDefault
sourceNomanual
contentYes
image_pathNo
auto_cross_pollinateNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations, so description bears full burden. It discloses auto-tag extraction, domain/project linking, and cross-pollination behavior. Could mention if other tables are modified, but overall adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise, front-loaded with main action, and uses an Args section. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With output schema present, return values need not be described. Covers core functionality, side effects, and parameter details. Could mention content length constraints but not critical.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but description adds meaningful context for all 4 parameters: content as idea text, source with default, image_path optional, and auto_cross_pollinate with behavior explanation. Fully compensates for schema gaps.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states 'Store an idea in the SQLite ideas table' with specific verb and resource. Distinguishes from siblings like add_memory_entry and capture_observation by mentioning auto-tagging and cross-pollination.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implies usage for capturing ideas with automatic connections, but no explicit when-not-to-use or alternatives. The cross-pollination feature is highlighted, but no guidance on when to disable it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

capture_observationMetis โ€” Capture ObservationA

Record a typed observation during an agent run.

Use this throughout a run to capture what you are learning so it can be
recalled in future sessions without re-reading history.

Args:
    observation_type: One of: discovery, decision, implementation, issue, note.
      - discovery:      something new you found out
      - decision:       a choice made and the reasoning behind it
      - implementation: what was built or changed
      - issue:          a bug, blocker, or failure found
      - note:           a general observation that doesn't fit above
    content:        The observation in 1โ€“3 sentences.
    agent_slug:     Which agent is recording (e.g. 'librarian').
    session_id:     Current pipeline session ID (optional).
    concepts:       Comma-separated concept tags โ€” auto-extracted if blank.
    related_files:  Comma-separated file paths this observation relates to.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
conceptsNo
agent_slugNo
session_idNo
related_filesNo
observation_typeYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.6/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It mentions recall in future sessions, implying persistence, but does not address side effects, mutability, authorization needs, or error behavior. This is a significant gap given the absence of annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear purpose, followed by parameter details. It is concise without fluff, though the parameter list is somewhat lengthy. Front-loading the purpose aids quick understanding.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists, return values are covered. The description explains what the tool does and its parameters adequately. However, it lacks details on error handling, rate limits, or required permissions, leaving some context gaps for an agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by explaining each parameter's purpose, expected format (e.g., content: 1โ€“3 sentences), and default behavior (e.g., concepts auto-extracted). This adds meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool records typed observations during an agent run, with specific observation types (discovery, decision, etc.) and the purpose of enabling recall in future sessions. This distinguishes it from sibling tools like add_memory_entry or add_journal_entry.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It advises using the tool throughout a run to capture learning, but does not explicitly state when not to use it or suggest alternatives like add_memory_entry or add_journal_entry. The guidance is implied but lacks explicit exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

check_data_safetyMetis ยท Data Guardian โ€” Check Data SafetyB

Scan content for PII patterns and classify sensitivity level.

Returns safety status, classification, and specific warnings.

Args:
    content: Text content to scan.
    file_path: Optional file path for context-based classification.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
file_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, and description lacks details on data handling (e.g., whether content is stored or modified), leaving significant behavioral ambiguity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and front-loaded with main action; Args section is somewhat redundant but acceptable given schema lacks descriptions.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Output schema exists and description mentions return values; parameter coverage is adequate but not comprehensive; no edge cases or prerequisites noted.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 0% description coverage; description provides one-line explanations for each parameter but adds limited additional value beyond the schema structure.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool scans content for PII patterns and classifies sensitivity level, distinguishing it from related tools like anonymize_text or redact_data_file.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when or when not to use this tool compared to siblings like anonymize_text; usage is implied but not clarified.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

clean_datasetMetis ยท Data Analyst โ€” Clean DatasetA

Apply cleaning operations to a dataset and write a new file.

NEVER modifies the original file. Always writes to output_path.

โš ๏ธ Writing a dataset requires authorization. This tool refuses to write
unless authorized=True (confirm with the user first) or the env var
METIS_ALLOW_DATA_WRITE=1 is set. This mirrors the Claude Code write-gate so
a rebuild can't bypass it via MCP.

Supported operations:
  - "drop_duplicates"                    โ€” remove exact duplicate rows
  - "drop_columns:[col1:col2:...]"       โ€” remove specified columns
  - "fill_na:[col:value]"                โ€” fill nulls in col with value
  - "rename_column:[old_name:new_name]"  โ€” rename a column
  - "strip_whitespace"                   โ€” strip leading/trailing spaces from all string columns
  - "standardize_dates:[col:format]"     โ€” parse col as date (format: 'auto' or strftime)
  - "drop_na_rows:[col]"                 โ€” drop rows where col is null
  - "drop_na_rows_any"                   โ€” drop rows with ANY null value

Args:
    path:         Absolute local path to the source dataset.
    operations:   List of operation strings (see above).
    output_path:  Where to write the cleaned file. If empty, appends '_cleaned'
                  before the extension (e.g. data.csv โ†’ data_cleaned.csv).

Returns JSON with: output_path, original_shape, cleaned_shape, row_delta,
col_delta, operations_applied, operations_skipped.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes
authorizedNo
operationsYes
output_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations present, so description carries full burden. It discloses no modification of original, authorization gate, and lists all supported operations with format examples. Returns expected output fields are noted.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Front-loaded with purpose, uses bullet points for operations, clearly highlights authorization. Slightly verbose but every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With output schema provided, description covers all necessary behavioral and operational details: never modifies original, authorization gate, all operations, parameter semantics. Fully equips agent to use tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but description provides detailed meaning for each parameter: path (absolute path), authorized (boolean with auth flow explained), operations (list with examples), output_path (default behavior when empty).

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states 'Apply cleaning operations to a dataset and write a new file' with a specific verb and resource. It distinguishes from siblings by focusing on execution vs. suggestion (suggest_cleaning) and other data tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Clearly explains never modifies original, always writes to output path, and authorization requirements. However, lacks explicit when-to-use vs. alternative tools like suggest_cleaning or profile_dataset.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

commit_session_decisionsMetis ยท Memory Curator โ€” Commit Session DecisionsA

Commit key decisions from this session to permanent memory.

This is the mandatory recording checkpoint โ€” call it at the end of every
agent-routed session, before delivering the final result to the user.
Unlike save_session_summary (which accepts any summary), this tool enforces
that at least one concrete decision is captured, and writes each decision
separately to episodic_memory for future retrieval.

Args:
    decisions: 1-5 plain-English decisions made this session. Be specific:
        "Chose logistic regression over mixed model due to data sparsity in
        Zone de Santรฉ X" not "made a modelling decision".
    summary: 1-3 sentence summary of the session context (optional but useful).
    key_topics: Topic tags e.g. ["DHIS2", "domain surveillance", "tracker design"].
    session_id: Optional session identifier.
ParametersJSON Schema
NameRequiredDescriptionDefault
summaryNo
decisionsYes
key_topicsNo
session_idNo

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses that the tool enforces at least one decision, writes to episodic memory, and requires concrete decisions. It does not mention side effects or permissions, but provides adequate transparency for a write operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-organized with a clear front-loaded purpose, usage note, and parameter list. It is slightly verbose but every sentence adds value. Could be slightly more concise, but still effective.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 4 parameters, no output schema, and no annotations, the description covers the tool's role, when to call, parameter details, and storage behavior. It provides sufficient context for an agent to use the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so description must compensate. It explains the decisions parameter with examples, notes summary's optionality, describes key_topics as tags, and session_id as optional. This adds significant meaning beyond the schema structure.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'commit', the resource 'key decisions from this session', and explicitly distinguishes from the sibling tool 'save_session_summary' by noting its enforcement of at least one decision and separate episodic memory storage.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit when to use: 'at the end of every agent-routed session, before delivering the final result'. Also gives an alternative tool ('save_session_summary') and explains the difference.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

compare_profilesMetis ยท Data Analyst โ€” Compare ProfilesA

Compare two dataset profiles and produce a side-by-side diff.

Pass the JSON strings returned by profile_dataset() for the original
and cleaned files. Returns rows added/removed, columns added/removed,
null count changes per column, type changes, and a human-readable summary.

Args:
    before_profile: JSON string from profile_dataset() on the original file.
    after_profile:  JSON string from profile_dataset() on the cleaned file.

Returns JSON with: row_delta, col_delta, column_diffs (nulls, dtypes),
duplicate_delta, and a human_summary string.
ParametersJSON Schema
NameRequiredDescriptionDefault
after_profileYes
before_profileYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so description carries full burden. It explains the comparison operation and return format but does not disclose whether the tool is read-only, potential side effects, error conditions, or performance implications. Basic behavioral traits are covered but not comprehensively.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is concise and well-structured: first sentence summarizes purpose, then explains inputs, then outputs. Uses clear formatting with bullet points for return fields. No redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given an output schema exists (not shown), description covers the key aspects: inputs, outputs, and usage. It could mention prerequisites (e.g., need to call profile_dataset first) but overall is adequate for a focused diff tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, yet description adds full context: each parameter (before_profile, after_profile) is described as a JSON string from profile_dataset() and explains their roles. This compensates entirely for the lack of schema detail.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool compares two dataset profiles and produces a side-by-side diff. It lists specific outputs like rows added/removed, columns added/removed, null count changes, type changes, and a human-readable summary. This distinguishes it from sibling tools such as profile_dataset.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly instructs to pass JSON strings from profile_dataset() and describes the arguments and return value. While it doesn't explicitly state when not to use or list alternatives, the usage context is clear and specific enough for correct invocation.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

configure_library_providerMetis ยท Librarian โ€” Configure Library ProviderA

Configure the library provider for this Metis installation.

Call this during setup or when switching reference managers.

Args:
    provider: "zotero" or "mendeley". Mendeley uses BibTeX export.
    api_key: Zotero API key (from https://www.zotero.org/settings/keys).
    user_id: Zotero numeric user ID (shown on the same settings page).
    bibtex_path: For Mendeley: full path to exported .bib file.
ParametersJSON Schema
NameRequiredDescriptionDefault
api_keyNo
user_idNo
providerYes
bibtex_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It explains provider-specific parameters and that Mendeley uses BibTeX export. However, it does not disclose whether the operation overwrites existing config, requires specific permissions, or has side effects like restarting services. This is adequate but not comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Very concise: two sentences describing purpose, then a bulleted list of argument explanations. Every sentence adds value; no fluff. Front-loaded with the key purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given that an output schema exists (not shown), the description doesn't need to explain return values. It covers usage scenarios (setup, switching) and parameter details. It could mention validation or success indicators, but is mostly complete for a configuration tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description compensates well. It explains that provider can be 'zotero' or 'mendeley', that api_key comes from a specific Zotero URL, user_id is numeric, and bibtex_path is for Mendeley. This adds meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it configures the library provider for the Metis installation, with a specific verb (configure) and resource (library provider). It distinguishes from sibling tools like import_bibtex_library and sync_zotero_library which are related but different operations.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explicitly says 'Call this during setup or when switching reference managers', providing clear context for when to use. It does not explicitly state when not to use it or list alternatives, but the guidance is sufficient.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

connect_project_folderMetis โ€” Connect Project FolderA

Register all relevant files in a project folder so Metis can read them.

Walks the folder recursively and adds every file with a recognised extension
(.R, .Rmd, .md, .py, .js, .ts, .sql, .json, .yaml, .qmd, .tex, .csv) to
the tracked_files table. Call this once per project; after that, use
read_file() to read any individual file.

Args:
    folder_path: Absolute path to the project root folder.
    label: Short label for all files from this project (e.g. "MLM Course").
    max_files: Safety limit โ€” stop after registering this many files (default 200).
ParametersJSON Schema
NameRequiredDescriptionDefault
labelNo
max_filesNo
folder_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description fully carries the transparency burden. It explains that the tool walks the folder recursively, adds files with recognized extensions to a `tracked_files` table, and includes a safety limit (max_files). This is adequate disclosure for a registration operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured with a clear separation of purpose, behavior, and parameter details. It is slightly repetitive in the first two sentences, but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the moderate complexity, the description covers the tool's purpose, usage flow, parameter meanings, and behavioral constraints. An output schema exists, so return values are documented separately. It lacks error scenarios but is otherwise complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description provides detailed explanations for each parameter: folder_path (absolute path), label (short label with example), and max_files (safety limit with default). This adds significant meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Register all relevant files in a project folder so Metis can read them.' It lists recognized extensions and distinguishes from the sibling tool `read_file()` by noting this is a one-time setup operation per project.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly says 'Call this once per project; after that, use read_file() to read any individual file.' This gives clear usage context and suggests an alternative, though it does not explicitly mention when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

consolidate_old_memoriesMetis ยท Memory Curator โ€” Consolidate Old MemoriesA

Consolidate old memories into monthly summaries and archive originals.

Tiered retention keeps recall() fast by compressing old raw entries into
distilled summaries while preserving the knowledge:

1. **Episodic decisions** older than decision_age_days (default 90) are
   grouped by month and project, summarised into a single consolidated
   entry per group, and the originals are marked archived=1 (excluded
   from default recall but still queryable).

2. **Session summaries** older than session_age_days (default 180) are
   marked archived=1 so they don't clutter keyword search.

3. **Reflexions** are consolidated monthly โ€” patterns are distilled
   into a single "what we learned in month X" entry.

Run with dry_run=True first to see what would happen without changes.

Args:
    decision_age_days: Archive episodic decisions older than this (default 90).
    session_age_days: Archive session summaries older than this (default 180).
    dry_run: If True, report what would be done without making changes.

Returns:
    A report of consolidation actions taken (or planned if dry_run).
ParametersJSON Schema
NameRequiredDescriptionDefault
dry_runNo
session_age_daysNo
decision_age_daysNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Despite no annotations, the description fully discloses behavior: how decisions are grouped and summarized, session summaries archived, reflexions consolidated monthly. It clarifies that originals are marked archived but still queryable, and that recall is kept fast. No contradictions with annotations (none provided).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with bullet points and separate sections. Efficiently communicates three consolidation rules and parameter details without unnecessary words. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Complete coverage: explains what the tool does, how it works for each memory type, parameter details, and return value (a report of actions). No gaps given the tool's complexity and parameter count.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description compensates fully by explaining each parameter's purpose and default values in the Args section. dry_run is clearly described as a preview mode, decision_age_days and session_age_days have clear functions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description specifically states it consolidates old memories into monthly summaries and archives originals, with clear breakdown of three memory types. It distinguishes from sibling tools like consolidate_reflexions and consolidate_session_memory by being the comprehensive consolidation tool for all old memories.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly advises to run with dry_run=True first to preview changes. Also provides default age thresholds and explains the tiered retention behavior, giving clear guidance on when to use this tool for memory maintenance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

consolidate_reflexionsMetis โ€” Consolidate Reflexions ToolA

Distil recurring reflexion themes into semantic memory and prune working memory.

Runs the nightly self-improvement consolidation: every theme an agent raised
>= min_count times in the last `days` becomes a searchable semantic-memory
node (deduped), and working_memory older than 7 days is pruned. Idempotent.
ParametersJSON Schema
NameRequiredDescriptionDefault
daysNo
min_countNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden. It discloses idempotency, deduplication, and the 7-day working memory pruning threshold. However, it omits authorization requirements or side effects like potential data loss, though the details given are substantial.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two sentences of functional explanation plus one for idempotence. No filler, key information front-loaded. Every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

An output schema exists, so return values are covered. The description explains the core transformation (reflexions to semantic nodes, pruning) and key constraints (count threshold, dedup, window). Missing minor details like error states or performance implications, but overall sufficient for a knowledgeable agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description explains both parameters: min_count and days are directly referenced in '>= min_count times in the last `days`'. This adds meaning beyond the bare schema, though it could be more explicit about default behaviors.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb-resource pair: 'distil recurring reflexion themes into semantic memory' and 'prune working memory'. It uses specific terms like 'min_count' and 'days' to define scope, distinguishing it from sibling consolidation tools like consolidate_old_memories and consolidate_session_memory.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states 'Runs the nightly self-improvement consolidation', indicating it's a periodic maintenance task. While it doesn't list when not to use it or alternative tools, the context is clear enough for an agent to infer appropriate scheduling.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

consolidate_session_memoryMetis ยท Memory Curator โ€” Consolidate Session MemoryA

Scan recent agent runs and write structured memory entries for high-value work.

Reads the n most recent agent_runs, identifies runs with output files and
substantive task summaries, deduplicates against existing memory_entries,
and writes new entries to the DB + markdown files.

Args:
    n_runs: Number of recent agent runs to review (default 20).
    min_quality: 'high' = only runs with output files; 'all' = include run-only entries.
ParametersJSON Schema
NameRequiredDescriptionDefault
n_runsNo
min_qualityNohigh

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description discloses key behaviors: reading recent runs, filtering based on output files and summaries, deduplication against existing entries, and writing to DB and markdown files. It lacks details on side effects or permissions but provides sufficient transparency for safe invocation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and front-loaded with the main action. The Args section is integrated but could be more structured (e.g., bullet points). Overall efficient with no wasted sentences.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with two parameters, high coverage in description, and an output schema (not shown), the description sufficiently explains the process, inputs, and outputs. No major gaps apparent for agent usage.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description's Args section explains both parameters (n_runs default 20, min_quality with options 'high' and 'all'). This adds meaningful context beyond the schema, clarifying behavior and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool scans recent agent runs, identifies high-value work, deduplicates, and writes memory entries. It specifies verbs 'scan' and 'write' with resources, and contrasts with similar siblings like 'consolidate_old_memories' and 'add_memory_entry' through its explicit workflow.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the tool reads recent runs and the meaning of parameters (n_runs, min_quality), implying use for consolidating session memory. However, it does not explicitly state when to use this vs alternatives like consolidate_old_memories or add_memory_entry, nor provides when-not-to-use guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

create_knowledge_databaseMetis ยท Librarian โ€” Create Knowledge DatabaseA

Register a new custom knowledge database layer.

After creating, add PDFs to knowledge/library/<your-folder>/ and call
build_pdf_knowledge_db(database='<slug>') to index them.

Args:
    slug:        URL-safe identifier (e.g. 'dhis2-specialist', 'malaria-research').
    name:        Human-readable name (e.g. 'DHIS2 Specialist Knowledge').
    description: What this database covers.
    layer:       Layer number (4+ for custom; built-ins use 1โ€“3).
    folders:     List of library subfolder paths to include
                 (e.g. ['open-access-books/Health Informatics & DHIS2']).
ParametersJSON Schema
NameRequiredDescriptionDefault
nameYes
slugYes
layerNo
foldersNo
descriptionNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. Discloses that it registers a database layer and that indexing requires a separate step. Does not mention idempotency, error behavior, or if overwriting occurs on duplicate slug. Adequate but not thorough.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Brief description followed by usage tip then parameter list. Each sentence adds value. Could be slightly more compact, but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers purpose, parameters, and follow-up steps. Has output schema (not shown) so return values are handled. Missing error handling or behavior on duplicate slugs. Adequate for a creation tool with moderate complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but description provides detailed explanations for all 5 parameters. Explains slug as URL-safe identifier, layer as 4+ for custom, folders with example. Adds value beyond basic type info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clear verb 'Register' and resource 'custom knowledge database layer'. Distinguishes from siblings like build_pdf_knowledge_db which is a follow-up step, but not explicitly compared to other create tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides sequential workflow: create, then add PDFs, then call build_pdf_knowledge_db. Explains layer numbering (4+ custom). Does not specify when not to use or alternatives, but gives practical context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

create_projectMetis โ€” Create ProjectA

Register a new project in the Metis platform.

Called when a researcher confirms they want a Claude conversation or project
tracked permanently in Metis. Creates the project record in the DB so it
appears in the Work tab and is available for task linking and memory search.

Args:
    title: Human-readable project name, e.g. "Statistics Course".
    description: What this project is about (one sentence).
    domain: Research domain, e.g. "education", "epidemiology". Optional.
    source: Origin โ€” "claude_project" (default), "claude_cowork", or "manual".
ParametersJSON Schema
NameRequiredDescriptionDefault
titleYes
domainNo
sourceNoclaude_project
descriptionNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It states the tool creates a DB record and makes the project available for linking and memory search, but does not mention error handling (e.g., duplicate titles), permissions, or side effects. This is adequate but not exhaustive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a one-sentence overview, a usage context sentence, an effect sentence, and a clear 'Args' list. No unnecessary words, and critical information is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (4 parameters, 1 required) and the presence of an output schema, the description adequately covers the behavior (record creation, UI appearance, linking capability). No major gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates fully by explaining each parameter: title (human-readable name with example), description (one sentence), domain (with examples), and source (with allowed values). This adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the specific action ('register a new project'), the resource (Metis platform), and the effect (creates DB record, appears in Work tab). It distinguishes from siblings like create_project_full by implying this is the standard project creation tool.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides a clear scenario for when to call the tool ('when a researcher confirms they want a Claude conversation or project tracked permanently'). It does not explicitly mention when not to use or alternatives like create_project_full, but the context is clear enough.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

create_project_fullMetis โ€” Create Project FullB

Create a project with full Metis integration: DB record, CLAUDE.md, Claude Desktop.

This is the unified project creation tool used by all installers and the dashboard.

Args:
    title:        Project name.
    folder_path:  Absolute path to the project folder on disk.
    category:     User-defined category (e.g. 'Article', 'Grant', 'Teaching').
    description:  What this project is about. If empty and scan_type != 'none',
                  auto-detected from folder.
    scan_type:    'names' | 'content' | 'none' โ€” how to infer description from folder.
    link_claude_desktop_auto: Write project to Claude Desktop config automatically.
ParametersJSON Schema
NameRequiredDescriptionDefault
titleYes
categoryNo
scan_typeNonames
descriptionNo
folder_pathNo
link_claude_desktop_autoNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must fully disclose behavioral traits. It does not mention idempotency, error handling on existing project, permissions, or side effects beyond creation. The listing of integrations is informative but insufficient for safe invocation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Very concise: two short sentences plus a clean arg list. All content adds value without redundancy. Front-loaded purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Output schema exists, so return value is covered. However, with 6 parameters and no behavioral context (e.g., overwrite behavior, folder requirements), the description lacks completeness for a tool of this complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema descriptions are absent (0% coverage), so the description carries the full burden. Each parameter has a concise explanation, with useful details like auto-detection for description and scan_type options. Title explanation is minimal but acceptable.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it creates a project with full Metis integration including DB record, CLAUDE.md, and Claude Desktop. It also notes it is the unified tool used by installers and dashboard, but does not explicitly differentiate from sibling 'create_project'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Describes intended use as the unified project creation tool, implying it is the standard path. However, no explicit guidance on when to use alternatives (e.g., simpler create_project) or when not to use this tool.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

create_taskMetis โ€” Create TaskA

Create a new task in the SQLite database.

Args:
    title: Short task description.
    project_id: Which project this task belongs to.
    owner: Who is responsible (default "Metis").
    notes: Additional details or context.
    due_date: Optional due date in YYYY-MM-DD format.
    recurrence: Optional repeat โ€” "daily", "weekly", "monthly", or "yearly".
                When a recurring task is completed, the next occurrence is created automatically.
    parent_task_id: Optional parent task โ€” set this to make this a subtask.
ParametersJSON Schema
NameRequiredDescriptionDefault
notesNo
ownerNoMetis
titleYes
due_dateNo
project_idYes
recurrenceNo
parent_task_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses key behaviors: default values for owner, recurrence auto-creation on completion, and subtask creation via parent_task_id. Does not discuss error conditions or side effects beyond creation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is well-structured with a clear header and bulleted parameter list. It is reasonably concise, though some lines are slightly verbose. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 7 parameters (2 required) and an existing output schema, the description covers all parameters with meaningful explanations. It lacks discussion of edge cases or error handling, but for a create operation, the essential context is provided.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, meaning parameters have no descriptions in the schema itself. The description compensates fully by providing clear explanations for each parameter, including formats (e.g., YYYY-MM-DD for due_date), allowed values (e.g., recurrence options), and usage context (e.g., parent_task_id makes it a subtask).

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states 'Create a new task in the SQLite database' with a specific verb and resource. It lists all parameters with explanations, distinguishing it from sibling tools like update_task and delete_task.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for creating tasks but does not explicitly state when to use this tool vs alternatives like update_task or delete_task. No guidance on when not to use it or context-specific recommendations.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

cross_pollinateMetis โ€” Cross PollinateA

Find cross-domain connections for given text.

Searches library_seeded, meetings, news_briefs, and ideas tables
for related items. Returns top 5 with source type, title, and snippet.

Args:
    content: Text to find cross-domain connections for.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description carries the burden of behavioral disclosure. It explains that the tool searches multiple tables and returns top results, but does not mention side effects, permissions, or response structure beyond the stated fields. The behavior is transparent enough for a read-only search.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: a single-sentence purpose followed by a bullet-like explanation of sources and return format, with one parameter. Every sentence is essential and well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema and the tool's straightforward search nature, the description adequately covers the tool's behavior, sources, and return structure. More guidance on when to use it among many similar siblings would improve completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'content' is described as 'Text to find cross-domain connections for,' which adds value over the name alone. However, with 0% schema description coverage, the description does not fully compensate by specifying format or constraints.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's function: finding cross-domain connections for given text, specifying the tables it searches and the structure of the result (top 5 with source type, title, snippet). This clearly distinguishes it from generic search tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use the tool (for cross-domain connections) but does not explicitly state when not to use it or provide alternatives among the many sibling search tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

daily_noteMetis โ€” Daily NoteA

Append to (or read) today's daily note โ€” one rolling note per day.

Unlike add_journal_entry (which creates a new row each time), daily_note
keeps a single entry per calendar day and appends timestamped lines to it โ€”
the Reflect/Tana "daily note" pattern for fast, low-friction capture.

Args:
    text: Line to append. Leave empty to just read today's note so far.
ParametersJSON Schema
NameRequiredDescriptionDefault
textNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses key behaviors: appends timestamped lines, can read when text is empty, single entry per calendar day. No annotations provided, so description bears full burden.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise: two short paragraphs plus an Args section. Every sentence adds value โ€” no redundancy or fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and existing output schema, the description covers purpose, usage, behavior, param semantics, and sibling differentiation completely.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description fully explains the single parameter 'text' โ€” its role in appending vs reading, and the default empty meaning.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the verb ('append to or read') and resource ('today's daily note') and distinguishes from sibling 'add_journal_entry' by noting the single-entry-per-day pattern.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit context for when to use ('for fast, low-friction capture') and contrasts with the sibling 'add_journal_entry', though no explicit when-not-to-use is given.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

decrypt_backupMetis โ€” Decrypt BackupA

Decrypt a .enc backup produced by encrypt_backup().

Reverses the format [8B magic][16B salt][12B nonce][ciphertext+tag]. Writes the
recovered .sqlite next to the .enc file (dropping the .enc suffix) unless
output_path is given. The passphrase is never stored. This is the counterpart
to encrypt_backup โ€” without it, encrypted backups could not be restored.

Args:
    enc_path:    Path to the .enc encrypted backup.
    passphrase:  The passphrase used at encryption time.
    output_path: Optional explicit destination for the decrypted file.

Returns JSON with out_path and the method used.
ParametersJSON Schema
NameRequiredDescriptionDefault
enc_pathYes
passphraseYes
output_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

In the absence of annotations, the description adequately discloses key behaviors: output file location (next to .enc or explicit output_path), that the passphrase is never stored, the format reversal, and the return structure. It could mention potential overwrite behavior or error conditions, but what is provided is sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-organized: a one-sentence purpose, format details, output behavior, parameter listing, and return format. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema that likely details the return structure, the description adequately covers the tool's purpose, behavior, parameters, and output. It fully addresses the needs of a decryption tool in this context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage, so the description must compensate. It provides clear, informative descriptions for all three parameters (enc_path, passphrase, output_path), explaining their roles in the decryption process. This fully compensates for the lack of schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states that the tool decrypts a .enc backup produced by encrypt_backup(), and explains the format it reverses. It clearly distinguishes itself from the sibling encrypt_backup by being its counterpart.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description identifies the tool as the counterpart to encrypt_backup, establishing when it should be used (to decrypt backups). While it doesn't explicitly list exclusion criteria, the context of being the decryption complement provides clear guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

delete_taskMetis โ€” Delete TaskA

Permanently delete a task from the database.

The destructive complement to create_task โ€” removes the task row entirely.
Use this for tasks created in error or no longer relevant; to instead mark
work finished (and continue a recurring series), use update_task with
status="done". Find the task_id with get_tasks. This cannot be undone.

Args:
    task_id: ID of the task to delete (as shown by get_tasks). Required.

Returns:
    A confirmation that the task was deleted, or a note if no task with that
    id exists.
ParametersJSON Schema
NameRequiredDescriptionDefault
task_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses that deletion is permanent and cannot be undone, and describes return values (confirmation or note if task not found). No annotations provided, so description fully carries the burden.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with sections but slightly verbose. The 'Args' and 'Returns' format is helpful but could be tightened.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers all necessary aspects: purpose, usage context, parameter detail, return value, and irreversibility. Appropriate for a simple tool with output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Adds meaning beyond schema by explaining task_id is obtained from get_tasks and is required. Schema coverage is 0%, so description compensates well. Could include format hint but sufficient.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states 'Permanently delete a task from the database' with a specific verb and resource. Distinguishes itself from siblings by contrasting with create_task and update_task.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly advises when to use (tasks created in error or no longer relevant) and when not (use update_task with status='done'). Also tells how to obtain task_id via get_tasks.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

detect_projectsMetis โ€” Detect ProjectsA

Scan a folder for unregistered git repos and article folders.

Useful for onboarding โ€” finds existing project folders that are not yet
tracked in Metis. Call create_project() for each item you want to register.

Args:
    scan_path: Absolute path to scan. Defaults to the parent of METIS_RC_ROOT.
ParametersJSON Schema
NameRequiredDescriptionDefault
scan_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It implies a read-only scan (detecting repos and folders), but does not explicitly state that no modifications occur. A direct statement would be better.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three short, front-loaded sentences: purpose, context, and parameter detail. Every sentence provides essential information without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the core functionality and parameter. Since an output schema exists (not shown), the absence of return value explanation is acceptable. It is adequate for the tool's simple nature.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter scan_path is described with its purpose ('absolute path to scan') and default behavior ('parent of METIS_RC_ROOT'). This adds significant value beyond the schema, which only has a default and title.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states it scans for 'unregistered git repos and article folders', which is a specific verb-resource combination. This clearly distinguishes it from sibling scanning tools like scan_folder_for_intent or scan_inbox.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explicitly mentions onboarding as the use case and directs to call create_project() for registration. While it doesn't list when not to use, the guidance is clear and actionable.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

dhis2_metadataMetis ยท DHIS2 Expert โ€” DHIS2 MetadataA

Query DHIS2 metadata with a simplified interface.

Convenience wrapper around dhis2_query() for common metadata lookups.

Args:
    resource: Metadata resource type โ€” e.g. "dataElements", "indicators",
              "organisationUnits", "programs", "dataSets", "trackedEntityTypes".
    filters:  Filter expressions in DHIS2 format, e.g. ["name:ilike:malaria", "valueType:eq:NUMBER"].
    fields:   Comma-separated field list (default: "id,name,shortName").
    paging:   Set True to get only the first page (faster for large resources).

Examples:
    dhis2_metadata("dataElements", ["name:ilike:HAT", "valueType:eq:INTEGER"])
    dhis2_metadata("programs", fields="id,name,programType,trackedEntityType[id,name]")
    dhis2_metadata("organisationUnits", ["level:eq:3"], fields="id,name,level,parent[id,name]")
ParametersJSON Schema
NameRequiredDescriptionDefault
fieldsNoid,name,shortName
pagingNo
filtersNo
resourceYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full behavioral transparency burden. It explains the paging parameter behavior ('get only the first page (faster for large resources)') and provides examples showing typical usage. It does not contradict any annotations (none present). However, it could explicitly state idempotency or read-only nature.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with sections (Args, Examples) and uses bullet points for parameter descriptions. It is concise yet informative, though the examples could be slightly trimmed without loss of clarity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 4 parameters (1 required), no enums, and an existing output schema, the description is complete. It covers all parameters, provides usage examples, and references the sibling tool dhis2_query. No gaps are left for an agent to misinterpret.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must add meaning. It does so by explaining each parameter: resource (with examples), filters (format with example), fields (default value), and paging (behavior). This goes beyond the raw schema, though it could provide more exhaustive resource examples or filter syntax details.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Query DHIS2 metadata with a simplified interface' and identifies itself as a 'Convenience wrapper around dhis2_query()', using specific verbs and resource types. It distinguishes itself from its sibling tool dhis2_query by emphasizing simplicity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies this is for common metadata lookups (as a wrapper) but does not explicitly state when to use this tool versus dhis2_query or other alternatives. It lacks explicit when-to-use or when-not-to-use guidance, leaving the agent to infer from 'simplified interface'.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

dhis2_queryMetis ยท DHIS2 Expert โ€” DHIS2 QueryA

Make an authenticated API call to the configured DHIS2 instance.

Returns the JSON response as formatted text. Use for live metadata
validation, data element lookup, indicator queries, and data quality checks.

Args:
    endpoint: API path relative to /api/, e.g. "dataElements" or "organisationUnits.json".
              If it does not start with "/api/", that prefix is added automatically.
    params:   Query parameters as a dict, e.g. {"fields": "id,name", "paging": "false"}.
    method:   HTTP method โ€” "GET" (default), "POST", or "PUT".
    body:     Request body for POST/PUT (serialised to JSON).

Examples:
    dhis2_query("dataElements", {"fields": "id,name,valueType", "paging": "false"})
    dhis2_query("system/info")
    dhis2_query("organisationUnits", {"filter": "level:eq:2", "fields": "id,name,level"})
ParametersJSON Schema
NameRequiredDescriptionDefault
bodyNo
methodNoGET
paramsNo
endpointYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It discloses that the call is authenticated, automatically prefixes '/api/', and allows GET/POST/PUT with a body. This clarifies the tool's behavior beyond a simple query, including mutation potential. However, it does not mention rate limits or error handling, which would be beneficial.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with clear sections (Args, Examples) and a concise first sentence that captures the core purpose. While slightly longer than minimal, every sentence adds value. No redundant content.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (implied), the description need not detail return values. It covers parameter details, usage context, and provides examples, making it self-contained for an agent to understand and invoke the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description compensates fully with detailed parameter explanations and examples. It explains 'endpoint' format, 'params' as a dict with examples, 'method' default and options, and 'body' usage. The examples further clarify common usage patterns, making parameter semantics very clear.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool makes an authenticated API call to a DHIS2 instance and returns JSON. It lists specific use cases (metadata validation, data element lookup, etc.), which distinguishes it from generic API tools. The verb 'Make' and resource 'API call to the configured DHIS2 instance' make the purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description suggests appropriate use cases ('Use for live metadata validation...') but does not explicitly state when to avoid this tool or compare it to alternatives like the sibling tool 'dhis2_metadata'. This lack of exclusion criteria or alternative guidance limits its usefulness for tool selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

diff_anonymizationMetis ยท Data Guardian โ€” Diff AnonymizationA

Return a unified diff comparing original and anonymized text.

Args:
    original:   Original (pre-anonymization) text.
    anonymized: Anonymized text from anonymize_text().

Returns a plain unified-diff string suitable for display.
ParametersJSON Schema
NameRequiredDescriptionDefault
originalYes
anonymizedYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It discloses that the tool returns a 'plain unified-diff string suitable for display,' but does not discuss side effects, permissions, or safety. The behavior is simple and non-destructive, but more detail would improve transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise, with a single-sentence summary followed by terse parameter definitions. Every sentence adds value, and the structure front-loads the core purpose. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity and the presence of an output schema, the description adequately covers inputs and return type. It specifies the return is a unified-diff string for display. Minor gaps exist in error handling, but overall complete for the task.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, and the description adds brief clarifications: 'Original (pre-anonymization) text' and 'Anonymized text from anonymize_text().' This adds some meaning beyond the schema, but lacks details on constraints or formatting expectations.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states 'Return a unified diff comparing original and anonymized text,' which clearly identifies the verb (Return) and resource (unified diff). It distinguishes itself from the sibling 'anonymize_text' by focusing on the comparison output.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage after anonymize_text by referencing 'anonymized text from anonymize_text().' This gives clear context for when to use the tool, though it does not explicitly state when not to use or list alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

discovery_introMetis โ€” Discovery IntroA

Return the tiny first-run orientation โ€” the 3-5 highest-value capabilities.

Use ONCE for a brand-new user (or when they ask 'what can you do?'). After this,
rely on `next_discovery_tip` for the long tail. No-op (returns '') if the intro was
already given or tips are off.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.9/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavior: it returns 3-5 capabilities, is a no-op (returns empty string) if already given or tips are off, and implies idempotency. No contradictions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences, each essential. Front-loaded with main purpose, then usage rules, then edge conditions. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and an output schema, the description explains the output (3-5 capabilities, empty string in some cases) and references the sibling tool. Fully adequate for a simple tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so schema coverage is 100%. The description adds value by explaining the return behavior and conditions for empty string, which goes beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it returns 'the 3-5 highest-value capabilities' for a first-run orientation, and distinguishes itself from sibling 'next_discovery_tip' by specifying that after this intro, that tool should be used.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly defines when to use: 'Use ONCE for a brand-new user (or when they ask what can you do?)' and specifies post-use behavior: 'After this, rely on next_discovery_tip for the long tail.' Also notes no-op conditions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

discovery_statusMetis โ€” Discovery StatusA

Report the discovery-tips state and a simple adoption read.

Tells you whether the just-in-time feature tips are on or off, the current
mode, any active snooze, and how many tips have been shown versus how many
of those features the user has since started using (adoption). Use it to
answer "are tips on?" or to sanity-check before changing them with
set_discovery_tips. Pairs with discovery_intro and next_discovery_tip.

Takes no arguments.

Returns:
    A one-line text summary: on/off, mode, snooze note, shown count, and
    how many shown features are now adopted.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, but the description discloses that the tool takes no arguments and returns a text summary describing multiple metrics. It does not explicitly state it is read-only or non-destructive, but the reporting nature implies it. The behavioral summary is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (5 sentences), front-loaded with the primary action, and structured logically: purpose, detailed output, usage hints, and no extraneous content.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite zero parameters and existing output schema, the description fully covers the tool's purpose, invocation context, and return value format, making it self-contained for an agent to understand and use correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with no parameters, so the description's statement 'Takes no arguments' adds clarity beyond the schema, achieving the baseline of 4 for no-parameter tools.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it reports the discovery-tips state and adoption read, with specific details (on/off, mode, snooze, counts). It distinguishes from siblings by naming them and explaining the tool's role.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly suggests use cases ('answer are tips on?', 'sanity-check before changing') and mentions sibling tools for alternative actions (discovery_intro, next_discovery_tip, set_discovery_tips). Provides clear context for when to invoke.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

draft_self_improvement_proposalMetis โ€” Draft Self Improvement Proposal ToolA

Draft a skill-improvement proposal from recent reflexions (Phase 9b).

Reads themed reflexions for ``agent_slug``, appends a 'Self-improvement
notes' section to the agent's current skill.md, and queues the result in
``skill_improvement_proposals`` with status='draft'.

The draft is NOT applied. Use ``apply_proposal(id)`` to write it to disk.
ParametersJSON Schema
NameRequiredDescriptionDefault
daysNo
agent_slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses it reads reflexions, appends to skill.md, queues as draft, and does not apply. With no annotations, description adequately covers main behaviors.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Four concise sentences front-loaded with essential info. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Output schema exists, so return format is covered. Missing explanation of 'days' param and any edge cases or side effects, but overall adequate for a 2-param tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage 0%, description only explains agent_slug but not 'days' parameter (default 14). Days likely controls reflexion timeframe but is left implicit.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states verb 'draft', resource 'skill-improvement proposal', and source 'recent reflexions'. Distinguishes from siblings like apply_proposal and propose_skill_improvement.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says draft is NOT applied and points to apply_proposal as alternative. Lacks context on when to choose over propose_skill_improvement or prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

encrypt_backupMetis โ€” Encrypt BackupA

AES-256-GCM encrypt a backup file.

Produces <backup_path>.enc. The passphrase is never stored.
Uses Python stdlib only (hashlib for key derivation, os.urandom for salt/nonce).

NOTE: This uses a simple PBKDF2+AES-GCM implementation.
For production-grade encryption, use a proper secrets manager.

Args:
    backup_path: Full path to the .sqlite backup file.
    passphrase:  Encryption passphrase.

Returns JSON with enc_path and whether original was removed.
ParametersJSON Schema
NameRequiredDescriptionDefault
passphraseYes
backup_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description carries the full burden. It states the passphrase is never stored and describes the output and return value, but does not mention overwriting behavior, error handling, or authentication requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with essential information front-loaded. Every sentence adds value, and the argument section is succinct.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity, the description covers key aspects: algorithm, output file, security note, and return JSON. It could mention potential errors or edge cases, but overall adequate.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must explain parameters. It provides brief but clear definitions for `backup_path` and `passphrase`, adding meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool encrypts a backup file using AES-256-GCM and produces an output file with '.enc' extension. It distinguishes itself from sibling tools like `decrypt_backup`.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It notes that the implementation uses Python stdlib and is simple, advising against production-grade use without a secrets manager. However, it does not explicitly contrast with other tools or specify conditions for use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

end_spanMetis โ€” End SpanA

Close an open span. Computes duration from start_ms to now.

Args:
    span_id: The span_id returned by start_span().
    status:  'ok' | 'error'. Default: 'ok'.
    error:   Error message if status='error'. Optional.

Returns a summary line: '{name} โ€” {duration_ms}ms [{status}]'
ParametersJSON Schema
NameRequiredDescriptionDefault
errorNo
statusNook
span_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses the computation (duration from start_ms to now) and return format. However, it does not mention side effects on a span store or error handling for invalid span_id.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences with a bullet list for args. Front-loaded purpose. No redundant information; every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given moderate complexity and presence of output schema, the description explains return format and parameter usage. Minor gap: no mention of error handling or behavior when span_id is invalid.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It provides complete descriptions for all three parameters, including use of span_id from start_span(), valid status values and default, and error condition. This fully adds meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Close an open span' and 'Computes duration from start_ms to now', specifying the verb and resource. It distinguishes from siblings like 'start_span' and 'log_span' by focusing on closing and timing.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage after 'start_span' but does not provide explicit when-to-use or when-not-to-use guidance. No alternatives are mentioned, leaving the agent to infer context from sibling tool names.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

enrich_meeting_with_crossrefsMetis ยท Meeting Memory โ€” Enrich Meeting With CrossrefsA

Find cross-references for a saved meeting: open tasks, related papers, active projects.

Call this after saving a meeting transcript (via Meetings tab or
transcribe_recording()). It extracts key topics from the transcript,
matches them against tasks, library papers, and active projects, and
returns a structured cross-reference brief.

The result is also written to the meeting's notes field in the database
so it appears in the Meetings tab.

Args:
    meeting_id: The meeting_id from the meetings table.

Returns:
    Formatted cross-reference brief listing matched tasks, papers, and projects.
ParametersJSON Schema
NameRequiredDescriptionDefault
meeting_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, description carries full burden. It discloses that the result is written to the meeting's notes field in the database, which is a side effect. However, it doesn't discuss permissions, rate limits, or other behavioral aspects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with a short summary, followed by usage context, behavior, and args/returns sections. No unnecessary sentences, but could be slightly more concise.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given a single parameter and existing output schema, the description covers the tool's purpose, usage context, side effects, and return value. It is complete enough for a tool with this complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Only one parameter (meeting_id) with 0% schema description coverage. Description adds 'The meeting_id from the meetings table', providing context beyond the schema's 'Meeting Id' title, but could offer more detail like format or example.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the verb 'find cross-references' and the resource 'saved meeting', specifying the types of cross-references (open tasks, related papers, active projects). It distinguishes from siblings by focusing on enriching a meeting after saving its transcript.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'Call this after saving a meeting transcript' and mentions the normal flow via Meetings tab or transcribe_recording(). Does not provide when-not-to-use or alternatives, but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

evaluate_against_layersMetis โ€” Evaluate Against LayersA

Stage 6 โ€” the evaluate gate. BEFORE you reply to the user, pass your drafted answer here. It checks the answer against the user's layers โ€” recorded preferences, persona voice, institutional facts โ€” and surfaces any conflict to fix first.

Returns a verdict (OK / REVIEW), the preferences this answer must honor, and any
detected conflicts (e.g. a 'never use base apply' preference when the answer shows
`apply(`). Resolve REVIEW items before replying.

Args:
    answer: your drafted answer text.
    session_id: current session (optional).
    task_type: optional routing task_type for narrower preference recall.
ParametersJSON Schema
NameRequiredDescriptionDefault
answerYes
task_typeNo
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Description discloses that the tool returns a verdict (OK/REVIEW), the preferences to honor, and detected conflicts. It explains how to handle REVIEW results. With no annotations, the description carries full burden and does well, but could elaborate on edge cases (e.g., missing layers).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and well-structured: first sentence states purpose and timing, second explains output, third defines args. Every sentence adds value, no fluff, and front-loaded with key information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (implied by context signals), the description appropriately omits return value details. It covers what the tool does, when to use it, how to handle output, and parameter purposes. Could mention prerequisites (e.g., existing layers) but implicit in context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description adds meaning to each parameter: 'answer: your drafted answer text', 'session_id: current session (optional)', 'task_type: optional routing task_type for narrower preference recall'. This compensates well for the lack of schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Stage 6 โ€” the evaluate gate' that 'checks the answer against the user's layers'. It specifies the verb (evaluate/check) and the resource (drafted answer against layers). Distinct from sibling tools by being a specific pipeline stage.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'BEFORE you reply to the user, pass your drafted answer here' and 'Resolve REVIEW items before replying'. Provides clear context for when to use and what action to take on output, though no explicit alternatives are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

export_citationsMetis ยท Librarian โ€” Export CitationsA

Export library references as a citation file (BibTeX).

Closes the "no citation-style export" gap: produces a .bib you can import
into Word (via Zotero/Mendeley), LaTeX/Overleaf, or any reference manager,
and use for cite-while-you-write.

Args:
    query: Optional keyword filter over title/authors/journal. Empty = all.
    tag: Optional tag filter (substring match on the tags field).
    collection: Optional collection-name filter.
    fmt: Output format โ€” currently "bibtex" (RIS available via mine_references).
    limit: Max records to export (default 500).

Writes the file to outputs/exports/ and returns its path + a preview.
ParametersJSON Schema
NameRequiredDescriptionDefault
fmtNobibtex
tagNo
limitNo
queryNo
collectionNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description discloses file output to outputs/exports/, return of path and preview, and all parameter defaults. It does not mention idempotency or side effects, but the behavior is well-covered for a read/export tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single paragraph with a clear opening statement followed by a bullet-like list of arguments. Every sentence adds value, and the structure front-loads the purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite no annotations and 0% schema coverage, the description covers purpose, usage, parameters, output (path + preview), and provides an explicit alternative. It is complete for the tool's complexity, and an output schema exists.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, yet the description provides detailed explanations for all 5 parameters (query, tag, collection, fmt, limit), including default values and behavior. This fully compensates for the lack of schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool exports library references as a citation file (BibTeX) and uses specific verbs like 'Export library references as a citation file'. It differentiates from sibling 'mine_references' by noting RIS format is available there.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides context for use (cite-while-you-write) and explicitly names an alternative tool for RIS format. It does not explicitly state when not to use, but the alternative implies the exclusion.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

export_knowledge_markdownMetis ยท Librarian โ€” Export Knowledge MarkdownA

Export the library as a cross-linked Obsidian-style Markdown vault.

Writes one Markdown note per library item (YAML frontmatter + abstract) plus
an index, with [[wikilinks]] between items that share a tag โ€” the
claude-obsidian / LLM-Wiki pattern. Gives you a portable, human-readable,
git-diffable view of the knowledge graph you can open in Obsidian. Read-only
on the database; writes only Markdown.

Args:
    out_dir: Destination folder. Default: outputs/knowledge-export/ under the RC root.
ParametersJSON Schema
NameRequiredDescriptionDefault
out_dirNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description explicitly states 'Read-only on the database; writes only Markdown', which clarifies safety and side effects. It also describes the output format. However, it does not mention potential issues like overwrite behavior or performance with large libraries.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (about 120 words) and well-structured: purpose, format, portability, safety, and parameter. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity and the presence of an output schema, the description covers all critical aspects: what it does, output format, side effects, and parameter description. No missing essential information.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema coverage, the description compensates by explaining the single parameter 'out_dir' with a default path. It adds meaning beyond the schema, though it could elaborate on what 'RC root' means and behavior when omitted.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool exports the library as a cross-linked Markdown vault with specific details (YAML frontmatter, index, wikilinks). However, it does not explicitly differentiate from the sibling tool '_obsidian_vault', which may have similar functionality.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for creating a portable Markdown export but lacks explicit guidance on when to use this tool vs alternatives, such as other export or search tools. No 'when not to use' or alternative recommendations are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

extract_structuredMetis ยท Librarian โ€” Extract StructuredA

Extract a structured, cited evidence brief on a topic from the PDF library.

Elicit-style structured extraction: runs a fixed question set over the indexed
library (PaperQA2) and assembles a markdown table โ€” one row per field, each
answer carrying its citations. Useful for systematic-review scaffolding.

Args:
    topic: The subject to extract on (e.g. "HAT passive screening sensitivity").
    fields: Optional comma-separated fields to extract. Default set covers
            population, design, sample size, outcome, finding, limitations.
    scope: Which index to query ("default" or "ph_library"). Build it first
           with index_library_pdfs().
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNodefault
topicYes
fieldsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description bears full transparency burden. It discloses that the tool runs a fixed question set over the indexed library (PaperQA2) and assembles a markdown table with citations. It does not mention any destructive actions, which is appropriate for a read operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (6 sentences), front-loaded with the main purpose, and each sentence adds value. No fluff or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has three parameters (one required) and an output schema exists, the description covers the core functionality, parameter details, prerequisite, and use case. It is complete for an agent to select and invoke correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema coverage, the description richly documents all three parameters: topic with example, fields with default set, and scope with valid values and prerequisite instruction. It adds significant meaning beyond the schema's bare titles and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool extracts a structured, cited evidence brief from the PDF library using Elicit-style extraction, producing a markdown table. It distinguishes itself from sibling search tools by specifying the structured nature and fixed question set.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description indicates the tool is useful for systematic-review scaffolding and implies prerequisite indexing via scope mention. It lacks explicit when-not-to-use guidance but provides sufficient context relative to siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

find_connectionsMetis โ€” Find ConnectionsA

Search library, meetings, and news for items related to given text.

Searches library_seeded, meetings, and news_briefs tables for related
content using keyword matching.

Args:
    content: Text snippet to find connections for.
    limit: Maximum results per source (default 5).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
contentYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description must convey behavioral traits. It specifies keyword matching and the three tables, but omits details about result grouping, pagination, or ordering. Some behavioral context is provided, but not comprehensively.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: one sentence for purpose, one for method and tables, then parameter explanations. It is front-loaded with the primary action and contains no unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's moderate complexity and the existence of an output schema, the description covers the key aspects: what is searched, how, and parameters. It lacks detail on result structure (e.g., grouped by source) but is largely sufficient for an agent to invoke correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description fully explains both parameters: 'content' as the text to find connections and 'limit' with default 5 as max results per source. This adds meaning beyond the raw schema, compensating for the lack of schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches library, meetings, and news for items related to given text, using keyword matching. This distinguishes it from sibling single-source search tools like search_library, scan_news, etc., by specifying the combined scope.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for cross-source keyword searches but does not explicitly state when to use this tool versus alternatives like search_library or search_fulltext. No when-not-to-use or prerequisites are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

find_toolsMetis โ€” Find ToolsA

Search Metis's full tool catalogue and load the matching tools on demand.

Most Metis tools are kept out of the active set to save context; this finds the
ones you need by keyword (e.g. "dhis2 tracker", "clean dataset", "backup",
"knowledge graph", "transcribe"), makes them callable, and returns their names.
After calling this, call the returned tools directly as normal.

Args:
    query: Keywords describing what you want to do.
    limit: Max tools to return/load (default 8).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
queryYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries burden. States that tools are made callable and returns names, but does not disclose if it adds to or replaces existing active tools, or any side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is mostly concise but includes an 'Args' section that duplicates schema information. The main action is front-loaded, but the redundancy reduces conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers the tool's purpose, usage, and parameters. Output schema exists so return values need not be detailed. Explains why tools are kept out of active set. Missing details on persistence of loaded tools.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Description adds meaning beyond schema: defines query as 'keywords describing what you want to do' and limit as 'max tools to return/load'. Schema had no descriptions, so this is helpful. Could be more specific about query format.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool searches the full tool catalogue and loads matching tools on demand, which is a unique purpose distinct from sibling tools. It provides specific examples of query keywords.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explains when to use: to find tools by keyword to save context. It tells the agent to call returned tools directly. Does not explicitly state when not to use, but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

full_scanMetis ยท News Radar โ€” Full ScanA

Run all Metis update scans in sequence and return a combined report.

Runs:
1. News feeds (RSS) โ€” new items added to news_briefs
2. Literature folder โ€” new PDFs registered in literature_metadata
3. Inbox โ€” unprocessed items flagged
4. Tracked files โ€” changed files reported

No LLM calls. Safe to run at any time.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses that the tool makes no LLM calls and is safe, but it does not detail potential latency or side effects. The step breakdown adds trust.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with two short paragraphs. The numbered list of steps is well-structured and easy to parse.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters and the presence of an output schema, the description adequately covers the tool's purpose and behavior. It could mention error handling or time expectations but is otherwise complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters, so the description need not explain any. Baseline 4 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it runs all Metis update scans in sequence and returns a combined report, listing four specific scan types. This distinguishes it from individual scan tools like scan_news and scan_literature.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description notes it is safe to run at any time and makes no LLM calls, implying it can be used freely. However, it does not explicitly contrast with separate scan tools or state when to use the full scan vs. individual scans.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

generate_daily_insightMetis ยท News Radar โ€” Generate Daily InsightA

Assemble recent activity into context for the daily insight.

Gathers the raw material for a "what's happening across your research"
digest: the last 7 days of agent_runs summaries, last 3 days of high-signal
news_briefs, last 14 days of meeting titles, and last 7 days of new library
additions. It stores a placeholder row in daily_insights; the Metis agent
does the actual synthesis from the returned context. Read the stored result
later with get_daily_insight.

Takes no arguments.

Returns:
    A text block of the assembled recent context (and the sources drawn on)
    for the agent to synthesize into a daily insight.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description discloses that it stores a placeholder row in daily_insights and that the Metis agent does the actual synthesis. It also details the data sources and time ranges. With no annotations provided, the description fully covers behavioral traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured, starting with a one-sentence summary, followed by detailed data gathering spec, workflow hint, parameter note, and return description. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the purpose, data sources, workflow, and return value. With an output schema present, it does not need to explain return values in more depth. It could mention error handling, but overall it is complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has no parameters, so the baseline score is 4. The description explicitly states 'Takes no arguments,' which adds no extra meaning beyond the empty schema but is clear.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool assembles recent activity into context for a daily insight, specifying the exact types and time ranges of data gathered. It distinguishes itself from the sibling tool get_daily_insight by noting that get_daily_insight reads the stored result.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear workflow guidance: call this tool to generate the raw context, then use get_daily_insight to retrieve the synthesized result. It does not explicitly state when not to use this tool, but the guidance is adequate.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

generate_handoff_briefMetis โ€” Generate Handoff Brief ToolA

Generate a portable session handoff brief.

Captures: tokens used today, active projects, open tasks, recent agent
runs, and the most recent journal entry. Writes to
`metis/journal/YYYY-MM-DD_session_handoff_auto.md` and returns the brief.

Use this when a session is approaching its end, before `/clear`, or when
switching to another AI / device.
ParametersJSON Schema
NameRequiredDescriptionDefault
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, description details what is captured and where it writes, and that it returns the brief. No hidden side effects disclosed, but sufficient for a generation tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three well-structured sentences: purpose, details, usage guidance. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Describes captured data and output, but missing explanation of session_id parameter. Output schema exists but parameter gap hurts completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The sole parameter session_id is optional with default '' but the description does not explain its purpose or effect. Schema coverage is 0%, so description fails to add meaning.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it generates a portable session handoff brief, listing specific captured data and output location. This distinguishes it from siblings like add_journal_entry or save_session_summary.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use: before session end, /clear, or device switch. Does not mention when to avoid or alternatives, but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

generate_imageMetis โ€” Generate ImageA

Generate an image using AI and save it to the PKM.

Saves to {pkm_root}/outputs/images/YYYY-MM-DD_[slug].png

Args:
    prompt: Description of the image to generate.
    backend: "gemini" (default) or "huggingface"
    model: "flash" (gemini-3.1-flash-preview-image-generation),
           "imagen" (imagen-4.0-generate-001),
           "flux" (FLUX.1-schnell via HuggingFace)
    width: Image width in pixels (default 1024).
    height: Image height in pixels (default 1024).
    output_filename: Optional custom filename (without extension).
ParametersJSON Schema
NameRequiredDescriptionDefault
modelNoflash
widthNo
heightNo
promptYes
backendNogemini
output_filenameNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses the save behavior (path format) and parameter options, but lacks details on potential side effects (e.g., overwriting, costs, rate limits, authentication needs). The transparency is adequate but incomplete.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is front-loaded with a one-line summary and save path, followed by a structured Args block. It is clear and efficient, though the Args formatting is slightly verbose. Overall, good balance of detail and brevity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 6 parameters, 1 required, and no annotations, the description covers all parameters and the output location. An output schema exists, so return value documentation is not needed. However, missing usage guidelines and potential side effects prevent a perfect score. Still, it is largely complete for a generation tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Although schema description coverage is 0%, the description provides an 'Args' section that explains each parameter with defaults, allowed values, and example usage. This adds substantial meaning beyond the raw input schema, making parameter selection clear.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Generate an image using AI and save it to the PKM,' specifying a verb (generate), resource (image), and destination. The title 'Generate Image' aligns with the purpose, and among siblings there is a distinct 'list_generated_images' tool, so there is no ambiguity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not provide any guidance on when to use this tool versus alternatives, nor does it mention when not to use it. No prerequisites or contextual conditions are stated, leaving the agent to infer usage from the parameter description alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

generate_profiling_scriptMetis ยท Software Engineer โ€” Generate Profiling ScriptA

Generate a safe profiling script tailored to a specific dataset.

The generated script runs on the user's machine and reports ONLY
aggregates: variable names, types, unique counts, ranges, missingness,
and value frequencies (capped at 30 levels).  No row-level data leaves
the machine.  Output is structured JSON matching the register_data_dictionary
schema, ready for ingest_profiling_output().

If data_dictionary entries already exist for this dataset, the script
includes checks for those specific variables.

Args:
    dataset_name: Name of the dataset (used in filenames and DB).
    project_id:   Project ID for looking up existing variable info.
    language:     "r" or "python" (default "r").
    dataset_path: Path to the data file on disk. If empty, a placeholder is used.
ParametersJSON Schema
NameRequiredDescriptionDefault
languageNor
project_idNo
dataset_nameYes
dataset_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, description fully discloses key behaviors: no row-level data leaves the machine, only aggregates reported, output format matches register_data_dictionary schema. Safety promise is explicit.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise yet complete: one-line summary, behavioral notes, and args section. No redundant sentences; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers output format and safety guarantees. Lacks mention of prerequisites (e.g., R/Python installed) and error scenarios, but given output schema is present, description does not need to explain return values.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Args section explains each parameter beyond schema metadata (e.g., dataset_path usage, language options). Schema had 0% coverage, so description fully compensates with clear semantics.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the verb ('Generate'), resource ('profiling script'), and tailoring ('tailored to a specific dataset'). It distinguishes from sibling 'profile_dataset' by emphasizing safety and aggregate-only output.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides clear context for when to use, including optional checks for existing data dictionary entries. Lacks explicit when-not-to-use or alternative tools, but purpose is clear enough.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_agent_contextMetis โ€” Get Agent ContextA

Load an agent's system prompt and contract from the RC.

Reads system-prompt.md and contract.md from agents/{agent_slug}/.
If the agent is not found, lists all available agents.

Args:
    agent_slug: Folder name of the agent (e.g. "archivist", "librarian").
ParametersJSON Schema
NameRequiredDescriptionDefault
agent_slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, but the description discloses reading two files and the fallback of listing agents if not found. It does not overtly state it is read-only, but the behavior is clear enough for an agent to infer safety.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is three sentences plus an Args list, all directly informative. No wasted words, and the key action is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With one parameter and an output schema (not shown but present), the description adequately covers the tool's action and error case. It does not repeat schema details, leaving return format to the output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'agent_slug' has no description in the schema (0% coverage), but the description adds meaning by defining it as the folder name and providing examples. This compensates for the schema gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb ('Load') and resource ('agent's system prompt and contract'), and distinguishes from sibling 'get_*' tools by specifying it reads two specific files from an agent folder. It also notes a fallback behavior if the agent is not found.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description clearly states the tool's purpose (loading an agent's system prompt and contract) and includes an error-handling behavior. However, it does not explicitly compare to alternatives like 'get_context' or specify when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_agent_runsMetis โ€” Get Agent RunsA

Retrieve recent agent run history from the database.

Returns the log of past agent work โ€” what ran, when, its status, and token
usage โ€” for the dashboard or for reviewing recent activity. These rows are
written by log_agent_run. Results come back newest first.

Args:
    limit: Maximum number of runs to return, newest first (default 10).
    since: ISO date or datetime string; only runs at or after this time are
        returned. Empty string (default) returns runs from all dates.
    agent_slug: Filter to a single agent by slug, e.g. "librarian" or
        "metis". Empty string (default) returns all agents.

Returns:
    A text block listing the matching runs (run_id, agent, task summary,
    status, timestamp, token counts, model).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
sinceNo
agent_slugNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Since no annotations provided, description carries full burden. Clearly indicates read-only behavior (retrieve, returns log). Describes output format and ordering (newest first). Lacks explicit safety or authorization notes, but for a get tool the behavior is transparent enough.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and well-structured. First sentence states purpose, second explains what it returns, third gives relationship to log_agent_run, then bullet-style args. No redundant sentences.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers key aspects: what it does, parameters, return format (text block with fields). Output schema exists but description still lists fields. Could mention pagination or error cases, but for a simple retrieval it is sufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Input schema provides only titles and defaults (0% coverage), but description includes an 'Args' section explaining each parameter in detail: limit (max count, default 10), since (ISO date/datetime, empty for all), agent_slug (filter by slug, empty for all). This adds significant meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it retrieves recent agent run history from the database. Uses specific verb 'Retrieve' and resource 'agent run history'. Distinguishes from sibling tools like log_agent_run (write) and other get_* tools by focusing on runs and specifying results order.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Mentions usage 'for the dashboard or for reviewing recent activity' but does not explicitly state when not to use or compare with alternative tools. No exclusion criteria or guidance on selecting this over similar tools like search_memory or list_recent_sessions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_backup_scheduleMetis โ€” Get Backup ScheduleA

Return the current backup schedule configuration.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description must convey behavioral traits. It states a read operation but omits details like required permissions, rate limits, or whether the schedule is stored persistently. Adequate for a simple getter but could be more transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence, 8 words, no fluff. Every word adds value. Efficient and well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters and an output schema present, the description is complete for a simple retrieval tool. It sufficiently describes what the tool does.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, schema coverage is 100% vacuously. Description adds no parameter info, but baseline is 4 for 0-parameter tools.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Verb 'Return' clearly indicates retrieval, resource 'backup schedule configuration' is specific. Distinguishes from sibling tools like set_backup_schedule (write) and list_backups (list backups, not schedule).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description implies read-only usage but does not explicitly state when to use vs alternatives (e.g., set_backup_schedule, list_backups). No when-not-to-use advice is given.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_brainstorm_sessionMetis โ€” Get Brainstorm SessionA

Retrieve all turns in a brainstorm session.

Args:
    session_uuid: The session identifier returned by brainstorm_turn().
ParametersJSON Schema
NameRequiredDescriptionDefault
session_uuidYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description relies on 'Retrieve' to imply read-only behavior. It does not disclose any side effects, idempotency, or failure conditions, which is minimal for a retrieval tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with two sentences, including a structured args section. Every sentence serves a purpose with no waste.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, output schema exists), the description sufficiently covers retrieval and parameter purpose. No additional content needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage, but the description explicitly explains 'session_uuid' as 'The session identifier returned by brainstorm_turn()', adding source context beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'Retrieve' and resource 'all turns in a brainstorm session', clearly distinguishing it from siblings like 'brainstorm_turn' which creates turns, and 'list_brainstorm_sessions' which lists sessions.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives such as 'brainstorm_turn' or 'list_brainstorm_sessions'. The description lacks context for appropriate usage.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_constitutionMetis ยท Data Guardian โ€” Get ConstitutionA

M5.7.3 โ€” Load the Metis constitutional policy for agent context.

Returns a compact summary of behavioral rules appropriate for the
complexity level. Prepend to any agent's system context to enforce
shared policy across all agent types.

Args:
    level: 'quick' | 'standard' | 'deep' | 'chain'
ParametersJSON Schema
NameRequiredDescriptionDefault
levelNodeep

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden for behavioral disclosure. It only states it loads and returns a summary, but omits details on idempotency, authorization requirements, rate limits, or any side effects. For a read operation, this is a significant gap.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is highly concise: three sentences plus an argument list, each sentence adding unique value. It is front-loaded with the version and purpose, with no redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and an output schema (not shown but present), the description adequately covers the tool's role and expected output. It could be slightly more specific about the return format, but is generally complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'level' has no schema description (0% coverage), but the description lists explicit values ('quick', 'standard', 'deep', 'chain') and explains that it controls the complexity of returned behavioral rules. This compensates for the lack of schema documentation.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool loads the Metis constitutional policy for agent context, returning a summary of behavioral rules. It distinguishes itself from sibling get_* tools by specifying it enforces shared policy across all agent types, making its purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises to prepend the policy to any agent's system context to enforce shared policy. This provides clear context for when to use the tool, though it does not explicitly mention alternatives or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_contactsMetis โ€” Get ContactsA

Retrieve all contacts from the contacts table.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.5/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, so the description must disclose behavioral traits. It only states that the tool retrieves data without any details on side effects, permissions, or data size limits. The description is insufficient for a tool with no annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, clear sentence with no redundancy. It is appropriately concise, though slightly sparse.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple retrieval tool with no parameters and an output schema present, the description is sufficient. It explains the core action, but lacks additional context about data freshness or ordering.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters with 100% coverage, so the description does not need to add parameter meaning. Baseline for no parameters is 4.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'Retrieve' and resource 'contacts from the contacts table', clearly indicating the action and scope. It distinguishes itself from sibling tools by precisely naming the data source.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives like 'search_memory' or 'search_library'. There is no mention of prerequisites or context for usage.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_contextMetis โ€” Get ContextA

Recall relevant prior context within a token budget.

Progressive disclosure: returns more detail when budget allows.
  โ‰ค 500 tokens  โ†’ index only   (type + first 12 words per entry)
  โ‰ค 2000 tokens โ†’ preview      (type + first 40 words)
  >  2000 tokens โ†’ full         (complete content)

Combines semantic vector search (if fastembed available) with keyword
fallback, filtered to the last `days` days.

Args:
    query:        What you are looking for โ€” natural language.
    budget_tokens: How many tokens you can spend on context (default 2000).
    agent_slug:   Restrict to a specific agent's observations (optional).
    days:         How far back to search (default 90 days).
ParametersJSON Schema
NameRequiredDescriptionDefault
daysNo
queryYes
agent_slugNo
budget_tokensNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses progressive disclosure behavior, search method (semantic+keyword fallback), and time filtering. Without annotations, description carries burden; it covers key traits but omits side effects or permissions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise overall, uses bullet and list for clarity, front-loaded with main purpose. Minor redundancy in threshold examples could be trimmed but generally efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Fully explains behavior, input semantics, output format (progressive disclosure), and fallback logic. With output schema present, return values need no further detail.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 0% description coverage; description explains all 4 parameters in detail (natural language query, token budget, agent restriction, time window), adding significant meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states verb 'Recall' and resource 'prior context within a token budget'. Unique progressive disclosure feature distinguishes it from sibling memory tools like search_memory or recall.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit context for token budget and progressive disclosure thresholds, but does not directly contrast with sibling tools or state when not to use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_course_statusMetis ยท Course Builder โ€” Get Course StatusA

Return the current status of a course build (or all active builds).

Args:
    slug: Course slug. Leave empty to list all active builds.

Returns:
    Status summary including current step, modules, and next action.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It explains that parameters are optional and lists the return fields (status, steps, modules, next action), but does not disclose potential side effects, authentication needs, or rate limits. Adds some value but could be more explicit.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise with no wasted words. It front-loads the main action in the first sentence and then uses a clean Args/Returns structure. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (as per context signals), the description adequately covers the tool's purpose and return structure. The single optional parameter is fully explained, making the tool complete for its intended use.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The only parameter 'slug' is explained in the description as 'Course slug. Leave empty to list all active builds', which adds meaning beyond the minimal schema (just a string with default). Compensates for the 0% schema description coverage well.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool returns the current status of a course build, with the ability to list all active builds when slug is empty. This distinguishes it from sibling tools like start_course_build, publish_course, and review_course.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides a clear usage tip (leave slug empty for all active builds) and implies the tool is for checking status. However, it does not explicitly mention when not to use it or alternatives, but for a simple query tool, this is sufficient.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_daily_insightMetis ยท News Radar โ€” Get Daily InsightB

Retrieve a stored daily insight.

Args:
    date: Date in YYYY-MM-DD format. Empty = today.
ParametersJSON Schema
NameRequiredDescriptionDefault
dateNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must disclose behavioral traits. It only states 'retrieve a stored daily insight' but does not clarify side effects (likely none), error handling for missing dates, or whether it is read-only. Minimal transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise: a single purpose sentence plus a parameter definition. Every sentence is essential, and the structure front-loads the main action.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given a simple retrieval tool with an output schema, the description is largely adequate. However, it could be more complete by noting that the insight must exist for the date, or what happens if it doesn't. Still, it covers the core functionality.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description compensates by documenting the 'date' parameter with format and default behavior ('Empty = today'). This adds meaningful semantics beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states 'Retrieve a stored daily insight' which clearly identifies the verb and resource. However, it does not explicitly differentiate from the sibling tool 'generate_daily_insight', though the distinction is implicit.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives like 'generate_daily_insight' or other retrieval tools. Prerequisites (e.g., insight must exist) are not mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_glossaryMetis โ€” Get GlossaryA

Retrieve all glossary terms.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, and the description only states it retrieves terms. It does not disclose any behavioral traits such as read-only nature, rate limits, or side effects. The minimal description fails to compensate for the lack of annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence with no wasted words. It is concise and front-loaded with the core action.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (no parameters, clear return of all glossary terms) and the presence of an output schema, the description is complete and sufficient for an agent to understand the tool's output.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters, and schema coverage is 100%. According to guidelines, a baseline of 4 is appropriate as the description cannot add more parameter meaning beyond what the schema already conveys.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'Retrieve' and resource 'all glossary terms', clearly stating the action and scope. It also distinguishes from sibling 'add_glossary_term'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not explicitly state when to use this tool or when to avoid it. Usage is implied by the name and sibling context, but no direct guidance is provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_ideasMetis โ€” Get IdeasA

List captured ideas from your knowledge base, newest first.

Use this to review what you've been thinking about over a chosen time
window โ€” the ideas you logged with capture_idea โ€” so you can revisit,
connect, or act on them. Pairs with capture_idea (to add) and
cross_pollinate (to surface related work).

Args:
    scope: Time window to retrieve. One of "today", "week" (last 7 days),
        "month" (last 30 days), or "all". Defaults to "week".
    limit: Maximum number of ideas to return, newest first. Defaults to 20.

Returns:
    A formatted list of matching ideas with their timestamps and tags, or a
    friendly note if none were found in that window.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
scopeNoweek

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses ordering (newest first), default parameters, and return format ('formatted list' or 'friendly note'). Minor gap: doesn't specify pagination limits beyond limit parameter, but adequate for simple read operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: one sentence for purpose, one for usage context, then structured Args and Returns sections. Every sentence adds value, with no repetition or fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity, the description covers everything an agent needs: purpose, parameters, expected output, and usage context. It references sibling tools and explains the scope options, making it self-contained.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% (no parameter descriptions in schema), but description compensates fully. It explains scope enum values with defaults and limit max, adding essential meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('List captured ideas') and resource ('from your knowledge base, newest first'). It distinguishes itself from sibling tools by naming capture_idea and cross_pollinate, which are nearby in the sibling list.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use: 'review what you've been thinking about over a chosen time window.' Provides context: 'ideas you logged with capture_idea.' Mentions sibling tools for adding and connecting, giving clear alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_journalMetis โ€” Get JournalA

List journal entries from your knowledge base, newest first.

Use this to look back over your dated journal/log entries โ€” reflections,
progress notes, and session handoffs โ€” optionally from a given start date.
Helpful for "what was I working on lately?" and for rebuilding context at
the start of a session.

Args:
    date_from: Earliest entry date to include, as "YYYY-MM-DD". Empty
        string (the default) applies no date filter and returns the most
        recent entries.
    limit: Maximum number of entries to return, newest first. Defaults to 10.

Returns:
    A formatted list of journal entries with their dates, or a note if none
    match.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
date_fromNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It states tools lists entries newest first, optionally filtered by date, and returns a formatted list or note. Does not disclose potential side effects or permissions, but as a read operation the behavior is sufficiently transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear one-line summary, usage paragraph, parameter list, and return note. It is slightly verbose (e.g., 'Use this to' repeats the first sentence) but overall efficient and front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has an output schema (not shown) and no annotations, the description adequately covers behavior, parameters, and return format. It explains default behavior and edge case (no entries). For a simple read tool, it is complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It clearly explains 'date_from' format ('YYYY-MM-DD') and default behavior (no filter returns most recent), and 'limit' maximum count with default 10. This adds essential meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it lists journal entries from the knowledge base, newest first, and distinguishes it from other get_* tools by specifying it's for dated journal/log entries. The phrasing 'reflections, progress notes, and session handoffs' clarifies the content.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides good usage context: 'look back over your dated journal/log entries' and 'rebuilding context at the start of a session.' It does not explicitly compare to alternatives but the use case is clear. Could be improved with direct exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_library_statsMetis ยท Librarian โ€” Get Library StatsA

Summarise your literature library at a glance.

Use this to see how big and how current your reference collection is before
searching or citing: it reports the total number of papers, a breakdown by
source (e.g. Zotero, Mendeley, manual) and by item type, the most recently
added references, and โ€” if you sync Zotero โ€” when the library was last
synced. A quick "what's in my library right now?" overview. Takes no
arguments. Pairs with search_library and sync_zotero_library.

Returns:
    A formatted summary: total papers, counts by source and item type, the
    five most recent references, and Zotero sync state if available.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description discloses the read-only nature of the tool (no side effects implied) and details the returned information. With no annotations, the description carries the full burden, and it adequately describes what the tool does and returns.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear introduction, usage context, and return summary. While somewhat lengthy, every sentence adds value and it is front-loaded with the purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters, no annotations, and presence of an output schema, the description fully explains what the tool returns and when to use it. It is complete for a simple stat retrieval tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so the schema provides no info. The description implicitly states it takes no arguments, which adds value beyond the empty schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it summarises the literature library, reporting total papers, breakdown by source and type, recent references, and sync status. It uses a specific verb ('summarise') and distinguishes itself from siblings like search_library and sync_zotero_library.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly advises when to use: 'before searching or citing' to know library size and currency. It also notes it pairs with search_library and sync_zotero_library, providing clear context for selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_memory_healthMetis ยท Memory Curator โ€” Memory Health ReportA

Generate a health report for the memory palace.

Returns: entry counts by type, topic coverage map, coverage gaps vs active
projects, duplicate candidates, and entries without output file provenance.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses the output composition (entry counts, coverage map, etc.), implying a read-only operation. However, it does not explicitly state that no side effects occur or mention any required permissions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: one sentence for purpose and a compact list of outputs. Every sentence earns its place, and critical information is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and an output schema (not visible but signaled), the description fully explains what the tool returns. There is no missing information for an agent to invoke this tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters, earning a baseline of 4. The description adds value by detailing the return structure, which goes beyond the minimal schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool generates a 'health report for the memory palace' and lists the specific outputs (entry counts, coverage map, gaps, duplicates, provenance). This distinctively differentiates it from sibling tools that add, search, or manage individual memories.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for obtaining a health overview but does not explicitly state when to use this tool versus alternatives like search_memory or get_related_memories. No when-not or alternative recommendations are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_network_policyMetis ยท Data Guardian โ€” Get Network PolicyA

Return the current network access policy.

Returns 'normal' if no policy file exists (default).

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, so the description carries the full burden. It discloses the default return value ('normal') when no policy file exists, which is useful behavioral context. However, it does not mention side effects or permissions, which are minimal given the read-only nature.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences front-load the purpose with no extraneous information. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity, no parameters, and existence of an output schema, the description sufficiently covers what the tool does and its default case.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With zero parameters (schema coverage 100%), the baseline is 4. The description adds no parameter info because there are none, which is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool returns the current network access policy, with a verb ('Return') and specific resource, distinguishing it from the sibling 'set_network_policy'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies read-only usage but does not explicitly state when to use it over alternatives or provide exclusions. The context is clear but lacks explicit guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_new_publicationsMetis ยท News Radar โ€” Get New PublicationsA

Retrieve new publications, optionally filtered by topic.

Args:
    topic: Filter by topic tag. Empty = all topics.
    limit: Maximum results (default 20).
    unread_only: If True, only return unread publications (default True).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
topicNo
unread_onlyNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the burden. It states 'Retrieve' implying read-only, but does not disclose any behavioral traits like authentication requirements, rate limits, or side effects. Adequate but not rich.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with a clear two-line purpose followed by structured argument descriptions. No wasted words; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists, the description covers all parameters with defaults and behavior. Complete enough for an agent to use correctly without additional context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds significant meaning beyond the raw schema: explains the default values, that empty topic means all topics, and the filtering behavior of 'unread_only'. Schema coverage is 0%, so description fully compensates.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Retrieve' and resource 'new publications', with optional topic filtering. This distinguishes it from sibling tools like 'search_literature' which may retrieve all publications.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus alternatives like 'scan_news' or 'search_literature'. The purpose implies it's for recent publications but does not provide exclusions or context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_news_briefsMetis ยท News Radar โ€” Get News BriefsA

Retrieve recent news briefs from the database.

Args:
    limit: Maximum number of briefs to return (default 10).
    source_type: Filter by type โ€” "news" for RSS items, "article" for scientific papers. Empty = all.
    domain: Filter by domain tag (e.g. "HAT", "AI", "public-health"). Empty = all.
    since: ISO date string โ€” only return briefs created after this date. Empty = all.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
sinceNo
domainNo
source_typeNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.5/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It adequately describes the read operation but does not disclose potential side effects, permissions, or rate limits. It is clear but not deeply transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: a one-sentence purpose followed by a clean bullet-list of parameter details. No extraneous information or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (no need to describe return values) and 4 parameters, the description adequately covers parameter usage. It misses typical use cases or examples, but is sufficient for a simple retrieval tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by explaining each parameter's purpose, default values, and allowed values (e.g., 'news' vs 'article' for source_type). It adds meaning beyond the schema's raw title fields.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Retrieve recent news briefs from the database' with a specific verb and resource. However, it does not explicitly distinguish from sibling tools like 'scan_news' or 'get_new_publications', which could cause ambiguity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives (e.g., scan_news for RSS, search_literature for articles). There is no mention of prerequisites or exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_pdf_index_statsMetis ยท Librarian โ€” Get Pdf Index StatsA

Report indexing status and coverage for your PDF knowledge bases.

Use this to check how complete your RAG (retrieval) corpus is before
relying on grounded answers: it shows, per knowledge database, the document
and chunk counts, when it was last built, a domain breakdown, and which PDFs
are still un-indexed. A quick "is my library ready to answer questions?"
health check. Pairs with index_pdf_library (to index) and
search_pdf_knowledge (to query).

Args:
    database: Slug of a single knowledge database to report on (e.g.
        "ph-background"). Empty string (the default) reports on every
        database.

Returns:
    A formatted status report covering each database's counts, last-built
    time, domain breakdown, and any un-indexed PDFs.
ParametersJSON Schema
NameRequiredDescriptionDefault
databaseNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It describes the tool as a reporting function with no side effects, which is clear. However, it does not explicitly state that it is read-only or non-destructive, though implied.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is efficiently structured: a concise purpose sentence, a usage paragraph, and then explicit Args and Returns sections. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the tool's purpose, input, output contents, and sibling relationships. With output schema present, the return description is sufficient. Complete for a single-parameter reporting tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'database' has no schema description (0% coverage), but the description explains its default behavior (empty string reports all databases), provides an example slug, and clarifies its optional nature. This fully compensates for the lack of schema description.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Report indexing status and coverage for your PDF knowledge bases' and specifies the data shown (counts, last built, domain breakdown, un-indexed PDFs). It explicitly distinguishes from sibling tools index_pdf_library and search_pdf_knowledge.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use: 'check how complete your RAG corpus is before relying on grounded answers' and pairs with related tools for indexing and querying. This provides clear context and alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_pending_proposalsMetis โ€” Get Pending ProposalsA

List all skill improvement proposals awaiting review.

Returns proposals sorted by most recent first, with agent slug, rationale, and a diff summary (first 200 chars of proposed content).

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Describes sorting order (most recent first), returned fields (agent slug, rationale, diff summary), and truncation of diff summary to 200 chars. No annotations provided, so description carries burden; it covers key behaviors but omits potential details like pagination or limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences: first states purpose, second adds sorting and field details. No redundant information, well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Complete for a simple list tool with output schema (return values documented there). Covers sorting, fields, truncation, and scope. No missing critical details.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so schema coverage is 100%. The description correctly implies no parameters needed. With 0 params, baseline is 4.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists skill improvement proposals awaiting review, with specific verb 'list' and resource 'pending proposals'. It distinguishes from sibling tools like approve_proposal and reject_proposal by focusing on listing pending ones.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool vs alternatives. Does not mention when not to use it or suggest alternative tools for creating or approving proposals.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_project_categoriesMetis โ€” Get Project CategoriesA

Return all distinct project categories currently in use.

Lists the user-defined categories (e.g. "Article", "Grant", "Teaching")
that have been assigned to projects, so you can group projects or offer
an existing category before set_project_category invents a new one.

Takes no arguments.

Returns:
    A text line listing the distinct non-empty categories in alphabetical
    order, or a message that none are defined yet.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Describes output format (text line with categories) and fallback message. No annotations provided, so description carries full burden, which it does adequately.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise paragraphs plus a 'Returns' section. Front-loaded with purpose, no redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Fully describes input (none), output format, and usage context for a simple tool with no parameters and an output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters; schema coverage is 100%. Description adds value by explaining why no parameters are needed.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the tool returns all distinct project categories, with examples. Distinguishes from sibling set_project_category by noting it avoids inventing a new category.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implies usage when you need existing categories; mentions sibling set_project_category. No explicit when-not-to-use but context is clear given no parameters.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_project_statusMetis โ€” Get Project StatusA

Status of your registered projects.

Reads the project REGISTRY (the `projects` table โ€” the source of truth that
the dashboard Work tab shows), not just the folders on disk, and adds task
completion counts. Empty project_id lists ALL active projects; a specific
project_id (exact or partial) shows that one, enriched from its folder card
if a `projects/active/<name>/` folder exists.

Args:
    project_id: Project id (or part of one). Empty string = all active projects.
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must cover behavioral traits. It correctly states it reads the registry and enriches from folder cards if available. It also clarifies it is not just looking at folders on disk. Missing explicit mention of side effects (though it's read-only) or permissions, but sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is front-loaded with purpose, then details, and an Args section. Every sentence adds value without fluff. Perfectly sized for a simple tool.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The tool is simple (one optional param, read-only). The description, combined with the output schema (which exists), covers all necessary context for an agent to use it correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter project_id is fully explained: empty string lists all active projects, specific (exact or partial) shows that one. This adds significant meaning beyond the schema, which only shows a default value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it reads the project REGISTRY table, which is the source of truth for the dashboard, and adds task completion counts. This sets it apart from sibling tools that might scan folders or manage projects.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explains when to use an empty project_id (all active) vs a specific one, and mentions partial matching. However, it does not explicitly contrast with sibling tools like get_project_categories or list_contexts, but the scope is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_research_contextMetis โ€” Get Research ContextA

Retrieve research project context from the PKM.

Gathers information about the research structure, articles, milestones,
and methods to help with research planning and writing.

Args:
    section: What to retrieve -- "overview", "articles", "milestones", "methods".
    max_chars: Maximum characters to return for file-based sections (default 8000).
               Pass 0 for no limit.
ParametersJSON Schema
NameRequiredDescriptionDefault
sectionNooverview
max_charsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It mentions what information is retrieved but does not state that it is read-only, whether it requires authentication, or what happens if the context is missing. The safety profile is unclear.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a concise summary followed by parameter documentation. It is front-loaded with purpose. The 'Args' section adds value but could be slightly more concise. Overall efficient with minimal waste.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the availability of an output schema, the description adequately covers the tool's purpose and parameter semantics. It does not describe the return value structure, but this is handled by the output schema. The description is complete enough for effective usage.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds significant meaning beyond the schema for both parameters. For 'section', it enumerates valid values ('overview', 'articles', 'milestones', 'methods'). For 'max_chars', it explains the default, purpose, and special value 0 for no limit. This compensates for the schema's zero description coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool retrieves research project context from the PKM and lists specific information types (structure, articles, milestones, methods). The name and title align, and it distinguishes itself from siblings like 'get_context' or 'get_project_status' by focusing on research context.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies use for research planning and writing but does not explicitly state when to use this tool versus alternatives, nor does it mention prerequisites or exclusions. Given the large number of sibling tools, explicit guidance would be beneficial.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_spansMetis โ€” Get SpansB

Fetch recent agent spans, optionally filtered by session or run.

Args:
    session_id: Filter to this session. Optional.
    run_id:     Filter to this agent_runs.run_id. Optional.
    limit:      Max rows to return. Default: 50.

Returns a JSON array of span objects.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
run_idNo
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.2/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided; description does not state that this is a read-only operation, does not mention idempotency, rate limits, or the definition of 'recent'. Only states it returns a JSON array of span objects with a default limit of 50.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise with a clear purpose statement, structured Args block, and a brief return note. No unnecessary sentences or fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 3 optional parameters and an output schema, the description covers parameter semantics and return type. However, it lacks explanation of what a 'span' is, how 'recent' is defined, and any behavioral context like sorted order or pagination behavior.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

While schema coverage is 0%, the description adds meaningful interpretations for all three parameters: session_id filters by session, run_id filters by run, limit sets max rows with default 50. This compensates for the lack of schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states verb 'Fetch' and resource 'spans', with optional filters. It hints at recency but doesn't define it, and no explicit differentiation from sibling span tools like start_span or log_span, but the read intent is clear.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives like get_agent_runs or other get_* tools. It mentions optional filters but doesn't specify scenarios where filtering by session vs run is appropriate.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_tasksMetis โ€” Get TasksA

Query tasks from the SQLite database with optional filters.

Args:
    status: Filter by status -- "open", "done", "blocked", or "" for all.
    project_id: Filter by project. Empty = all projects.
    owner: Filter by owner. Empty = all owners.
    limit: Maximum results (default 25).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
ownerNo
statusNoopen
project_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It discloses the tool's read-only nature implicitly (querying) and mentions optional filters and a default limit. However, it lacks details on pagination (e.g., offset/cursor support), ordering, and any potential errors. The output schema exists, so return format is covered.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is highly concise: one summary line followed by a structured list of parameters with clear explanations. Every sentence is relevant and adds value. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple query tool with 4 optional parameters, an existing output schema, and no required fields, the description adequately covers the filtering behavior. It lacks information on sorting order or default ordering, but the tool appears straightforward. Overall, it is comprehensive enough for an agent to use correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must explain parameters. It does so for all four params: status (with allowed values), project_id, owner, and limit (with default). This adds meaning beyond the schema's title and default values. Minor ambiguity: description says '' for status means all, but default is 'open', which is clear enough.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Query') and resource ('tasks'), clearly distinguishing it from sibling tools like create_task, update_task, and delete_task. It states that the tool queries tasks from a SQLite database with optional filters, which is precise and unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies this is the primary task listing tool via the phrase 'Query tasks from the SQLite database', but it does not explicitly specify when to use it versus other search or memory tools (e.g., search_memory, list_recent_sessions) or provide exclusion criteria. No alternatives are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_thinking_profileMetis โ€” Get Thinking ProfileA

Read and return the current thinking profile from system/thinking-profile.yaml.

Falls back to default structure if the file does not exist.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden. It clearly states it reads from a YAML file and falls back to a default structure if the file does not exist, which is an important behavioral detail. No mention of idempotency or side effects, but the read-only nature is implied.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, no redundancy. The main action is front-loaded, and the fallback behavior is provided in a separate sentence. Every word adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a zero-parameter read tool with an output schema, the description is adequate. It specifies the source path and fallback behavior. Could be improved by explicitly stating idempotency or read-only nature, but the current info is sufficient for an agent to understand what happens.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so there is nothing to explain. The schema coverage is 100%, meeting the baseline expectation. The description correctly avoids inventing unnecessary parameter details.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Title and description clearly state it reads the thinking profile from a specific file. The verb 'Read and return' plus resource path makes purpose unambiguous. Siblings like reset_thinking_profile and update_thinking_profile confirm this as the read operation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Usage guidance is minimalโ€”only describes what the tool does, not when to use it versus alternatives. No explicit when-not-to-use or mention of sibling tools. For a zero-parameter getter, the need is obvious, but explicit guidance could improve differentiation from related tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_topic_memoryMetis ยท Memory Curator โ€” Get Topic MemoryA

Return all memory entries tagged with a specific topic, newest first.

Args:
    topic: Topic tag to filter by (e.g. "metis-setup", "phd-research").
ParametersJSON Schema
NameRequiredDescriptionDefault
topicYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description bears full responsibility for behavioral disclosure. It states ordering and filtering but does not mention side effects, safety (read-only assumption), pagination, or limits. The read-only nature is not explicitly stated, and potential size of returned data is omitted.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two sentences plus an args listing, with the main action front-loaded. Every word contributes essential information, no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter) and the presence of an output schema, the description is mostly adequate. However, it lacks context on what constitutes a 'memory entry' (e.g., fields included) and how this tool differs from other memory retrieval tools, which is relevant due to many siblings.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The single parameter 'topic' has 0% schema description coverage. The description adds a clear explanation and concrete examples (e.g., 'metis-setup', 'phd-research'), which compensates well. Could be improved by specifying allowed characters or format, but it suffices.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly specifies the verb 'Return' and the resource 'memory entries tagged with a specific topic', with ordering 'newest first'. This distinctively identifies its function among siblings like search_memory or list_recent_memory.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Usage context is implied by the description (use when you need all entries for a topic, newest first), but there is no explicit guidance on when not to use or alternatives. The description does not differentiate from similar tools like search_memory.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_user_configMetis โ€” Get User ConfigA

Return the full Metis user configuration from user-config.yaml.

Returns the complete YAML content (research interests, data sensitivity,
specialist contexts, etc.). For a lightweight profile summary (name,
interests, news_topics), use get_user_profile() instead.
Creates the config file with defaults if it does not exist yet.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description alone discloses that it creates the config file with defaults if missingโ€”an important side effect beyond a simple read. No other behavioral claims are made, but the disclosure is sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences, front-loaded with the key action, no redundant words. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a parameterless tool with an output schema, the description fully explains returns and side effects. It is complete given the simplicity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so schema coverage is 100%. The description adds value by explaining the output content (YAML with research interests, etc.), which is beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it returns the full Metis user configuration from user-config.yaml, specifying the source and content (research interests, data sensitivity, etc.). It distinguishes from the sibling tool get_user_profile, so purpose is unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides explicit guidance: it recommends get_user_profile for a lightweight summary, implying when to use this tool for the full config. It also notes the file creation behavior. No explicit when-not-to-use, but the alternative is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_user_profileMetis โ€” Get User ProfileA

Return the user's identity, interests, style, and model preference.

Call this at the start of any personalised run to understand the user's
topics, news signals, and communication preferences.

Returns JSON with:
- display_name: user's display name (set via /metis_config)
- role: professional role (e.g. "Senior researcher")
- interests: list of research interest tags
- news_topics: list of news monitoring topics
- active_model: current default model slug (haiku / sonnet / opus)
- style: dict of communication preferences:
    - response_length: "concise" | "moderate" | "detailed"
    - feedback_style: "gentle" | "direct" | "challenging"
    - challenge_level: "supportive" | "balanced" | "rigorous"
    - warmth: "warm" | "neutral" | "formal" (default: "warm")
    - detail_level: "brief" | "balanced" | "thorough" (default: "balanced")
    - routing_verbosity: "silent" | "natural" | "detailed" (default: "natural")

Usage pattern:
  profile = json.loads((await get_user_profile())[0].text)
  interests = profile['interests']
  style = profile['style']  # โ†’ {"response_length": "concise", "warmth": "warm", ...}
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must cover behavior. It details the return structure (fields, nested style dict) and implies read-only nature. It doesn't mention side effects or authorization, but for a simple profile lookup, this is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, well-structured, and front-loaded. First sentence states purpose, then usage guidance, detailed output fields, and a code example. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and an existing output schema, the description provides complete context: when to use, detailed output format, and a usage pattern. The code example further aids correct invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist (input schema empty), so schema description coverage is 100%. Baseline for 0 params is 4. The description adds value by explaining output fields, though not param-related.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Return the user's identity, interests, style, and model preference.' It specifies the resource (user profile) and action (return). Among siblings, it uniquely focuses on personal profile data.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'Call this at the start of any personalised run,' providing clear context for when to invoke. While it doesn't mention when not to use or list alternatives, the guidance is sufficient for typical use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_user_topicsMetis ยท News Radar โ€” Get User TopicsB

Return all active topics from user_topics.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description indicates a read-only operation ('Return') with no side effects, which is transparent for a simple list. However, it does not clarify what 'active' means, or whether results are paginated or sorted. Without annotations, more detail would be beneficial.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, concise sentence with no unnecessary words. It is front-loaded and efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has no parameters and an output schema exists, the description is minimally adequate. However, it could benefit from explaining what 'active' means or providing an example of the return format.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters, so the schema provides complete coverage. The description adds no parameter information, but none is needed. Baseline score of 4 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Return') and resource ('active topics from user_topics'), making the tool's purpose clear. However, it does not differentiate from sibling tools like add_user_topic or get_topic_memory, limiting its distinctiveness.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives. There is no mention of context, prerequisites, or exclusions, leaving the agent to infer usage from the name alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

get_working_memoryMetis ยท Memory Curator โ€” Get Working MemoryA

Retrieve working memory for a session, or the most recent entries if no session given.

Args:
    session_id: Pipeline session ID. Leave empty to get the 20 most recent entries
                across all sessions.
ParametersJSON Schema
NameRequiredDescriptionDefault
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, but description discloses retrieval behavior and quantifies result limit (20 entries) for the no-session case. Could mention side-effect free nature more explicitly.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences plus an Args section, front-loaded with main functionality. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple tool (1 optional param, output schema exists), the description fully covers behavior and parameter usage without omission.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Single parameter session_id is explained in detail: 'Pipeline session ID. Leave empty to get the 20 most recent entries across all sessions.' This compensates for the 0% schema description coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it retrieves working memory for a session, with conditional behavior based on session_id. This differentiates it from siblings like get_agent_context or get_related_memories.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides clear context for when to use with or without a session_id, but does not explicitly mention when not to use or list alternative tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

import_bibtex_libraryMetis ยท Librarian โ€” Import Bibtex LibraryA

Import papers from a BibTeX file into literature_metadata.

Use this for Mendeley users: export your library from Mendeley as BibTeX,
then point this tool at the file.

Args:
    bibtex_path: Full path to the .bib file (e.g. from Mendeley export).
ParametersJSON Schema
NameRequiredDescriptionDefault
bibtex_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry the full burden of behavioral disclosure. It only states the basic import operation without discussing side effects (e.g., duplication handling, overwrite behavior, validation). A user or AI agent would not know if this action is destructive or idempotent, or if it requires specific file permissions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: two sentences for purpose and usage, plus a two-line args section. Every sentence contributes useful information, and there is no redundancy or fluff. The structure is clear and easy to scan.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple one-parameter tool with an output schema, the description is adequate but incomplete. It lacks guidance on error cases (e.g., invalid BibTeX, file not found), expected output format (though output schema exists), and whether the tool validates entries before importing. The description meets minimum viability but misses behavioral and error-handling context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description adds meaning beyond the schema. It describes the sole parameter 'bibtex_path' as 'Full path to the .bib file (e.g. from Mendeley export).' This clarifies that it expects a file path and gives an example. However, it does not specify whether relative paths or remote paths are allowed, nor does it mention file encoding.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's action ('Import papers from a BibTeX file') and resource ('into literature_metadata'). The verb 'import' and target 'literature_metadata' are specific. Among siblings like other import/search tools, this one uniquely handles BibTeX import, so it is well-distinguished.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description gives a concrete use case ('Use this for Mendeley users: export your library from Mendeley as BibTeX, then point this tool at the file.'). This provides clear context for when to use it, but it does not explicitly state when not to use it or mention alternatives. Other import tools exist (e.g., import_citations) but are not referenced.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

index_library_pdfsMetis ยท Librarian โ€” Index Library PdfsA

Build or rebuild a PaperQA2 index over the user's PDF library.

Walks knowledge/library/ (all subdirectories), collects PDFs, and indexes
them with PaperQA2 + Claude Haiku. The index is persisted so that
ask_library() can query it without re-reading every PDF.

Run once after adding new papers, or with force_reindex=True to rebuild.

Args:
    force_reindex: Rebuild from scratch even if an index already exists.
    topic_filter: If given, only index PDFs whose parent folder name
                  contains this string (e.g. "NTD", "Epidemiology", "Methods").
    scope: Which library to index. "default" = knowledge/library/ (all PDFs).
           "ph_library" = knowledge/library/ph-background/ (public health background).
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNodefault
topic_filterNo
force_reindexNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, but the description details the indexing process (walks directories, uses PaperQA2 + Claude Haiku) and explains persistence for subsequent queries via ask_library(), providing solid behavioral context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (9 sentences), front-loads the main action, and introduces parameters in a clear list. Every sentence adds unique value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 3 optional params and an output schema, the description covers purpose, usage, behavior, and parameter details completely, leaving no significant gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by explaining each parameter's meaning and effect: force_reindex (rebuild), topic_filter (folder name filter), scope (which library directory).

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb-resource pair ('Build or rebuild a PaperQA2 index over the user's PDF library') and distinguishes the tool from siblings like ask_library which queries the index, making its purpose very clear.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicit guidance is given: 'Run once after adding new papers, or with force_reindex=True to rebuild.' This clearly states when to use the tool, though it does not directly exclude alternatives like index_pdf_library.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

index_pdf_libraryMetis ยท Librarian โ€” Index Pdf LibraryA

Extract and index full text from all PDFs in the Metis library.

Reads PDFs from inputs/literature/ and Zotero storage.
Stores first 4000 characters per paper in library_fulltext table.
Also updates literature_metadata.abstract for any matched papers.
Incremental โ€” only processes files not yet indexed.

Args:
    scope: "literature" = inputs/literature/ only | "zotero" = Zotero storage only | "all" = both
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNoall

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden and discloses key behaviors: reads PDFs, stores first 4000 characters, updates abstracts, and is incremental. It does not mention destructive actions, but the mutation of metadata is transparently described.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with clear bullet points and an Args section. It is front-loaded with the main purpose. Could be slightly more concise, but overall effective.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (not shown but indicated), the description does not need to explain return values. It sufficiently covers inputs, behavior, and incremental nature. No gaps identified.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description includes an 'Args' section that explains the possible values for the single parameter 'scope' (literature, zotero, all), which the schema only defines as a string with no enums or description. This adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool extracts and indexes full text from PDFs in the Metis library, specifying sources (inputs/literature/, Zotero storage) and storage destinations. It differentiates itself by mentioning incremental processing and scope parameter.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for indexing PDFs but does not provide explicit guidance on when to use this tool versus alternatives like 'index_library_pdfs' or 'scan_literature'. No when-not-to-use or prerequisites are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

ingest_ideas_documentMetis โ€” Ingest Ideas DocumentA

Import an ideas document (Word/text/markdown) and capture each idea.

Reads the file, splits it into discrete items (paragraphs, bullet points,
or numbered items), and calls capture_idea() for each non-empty item.
Supports .txt, .md, and .docx files.

Args:
    file_path: Absolute or METIS_RC_ROOT-relative path to the ideas file.
ParametersJSON Schema
NameRequiredDescriptionDefault
file_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description explains the reading, splitting, and calling of capture_idea() per item. It does not mention error handling, duplicate detection, or limits. No annotations are present to supplement, so it carries the full burden but is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: three sentences plus a single bullet for the argument. It is front-loaded with the purpose, and every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists (assumed to document return values), the description covers input, process, and file types adequately. It lacks details on edge cases like empty files or duplicates, but is sufficient for a simple tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The only parameter, file_path, is described as absolute or relative to METIS_RC_ROOT. This adds meaning beyond the schema property name. Since schema description coverage is 0%, the description compensates well.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool imports an ideas document and captures each idea by splitting into discrete items and calling capture_idea(). It specifies supported file formats (.txt, .md, .docx). This distinguishes it from the sibling tool capture_idea which handles single ideas.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for bulk import of ideas from a document, but does not explicitly state when to use this tool versus capture_idea for individual entries. No exclusion or alternative guidance is provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

ingest_profiling_outputMetis ยท Software Engineer โ€” Ingest Profiling OutputA

Read JSON profiling output and register it as a data dictionary.

The user runs the profiling script locally (generated by
generate_profiling_script), which produces a JSON file.  This tool
reads that JSON and calls register_data_dictionary logic to insert/replace
the variable definitions.

Args:
    json_path:    Absolute path to the profiling JSON output file.
    dataset_name: Override the dataset name (default: read from JSON).
    project_id:   Project to associate the dictionary with.
ParametersJSON Schema
NameRequiredDescriptionDefault
json_pathYes
project_idNo
dataset_nameNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must bear the full burden. It mentions 'insert/replace' indicating potential overwriting, but does not specify effects on existing data, error handling, or permission requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a one-line summary, followed by a short workflow explanation, then an Args block. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the workflow and parameters adequately. Given the existence of an output schema, return values are not required. It could mention prerequisites (e.g., JSON must be from profiling script) but already implies it.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates well by explaining each parameter: json_path, dataset_name, and project_id. It provides usage details like 'absolute path', 'override the dataset name', and 'project to associate'.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool reads JSON profiling output and registers it as a data dictionary. This distinguishes it from siblings like 'generate_profiling_script' (which produces the JSON) and 'register_data_dictionary' (which might have a different input).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains that the tool is used after running a profiling script locally, which generates a JSON file. It sets the context for when to use it, but does not explicitly list alternatives or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

kg_communityMetis โ€” KG CommunityA

Return the connected cluster around a given knowledge library note.

Performs BFS flood-fill from the given note up to `depth` hops,
returning all reachable notes grouped by distance. Useful for surfacing
related concepts when working on a specific topic.

Args:
    note_path: Relative path from knowledge/library/ (e.g. 'disease-areas/[condition].md')
    depth:     Maximum hop distance to explore (default 2).
ParametersJSON Schema
NameRequiredDescriptionDefault
depthNo
note_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, so the description carries full burden. It explains the BFS algorithm, depth parameter behavior, and output grouping by distance, but omits side effects or safety guarantees. This is sufficient for a read-only tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with a bold first line, followed by an algorithm explanation and clear parameter docs. Every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has an output schema (context signal) and only two simple parameters, the description fully covers behavior and parameter usage, making it complete for practical use.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description provides comprehensive parameter documentation, including file path format and default depth value, adding essential meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Return the connected cluster around a given knowledge library note' with a specific verb and resource. It distinguishes from sibling tools like kg_paths and kg_memory_connections by its BFS flood-fill approach for community detection.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides usage context ('Useful for surfacing related concepts when working on a specific topic') but does not explicitly state when not to use or mention alternative sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

kg_index_memoryMetis โ€” KG Index MemoryA

Build a knowledge graph from memory entries, linking items by shared topics.

Scans memory_entries, episodic_memory, semantic_memory, and ideas,
extracts their topic tags, and creates bidirectional edges between
items that share topics. This makes cross-pollination between memory
layers discoverable via kg_memory_connections().

Takes no arguments. Safe to re-run (uses REPLACE semantics).

Returns:
    Summary of nodes and edges indexed.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, but the description fully compensates by disclosing key behaviors: it takes no arguments, creates bidirectional edges, uses REPLACE semantics (safe to re-run), and returns a summary. It also explains the outcome (cross-pollination discoverable). No behavioral traits are hidden.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Five short sentences front-loaded with the main action, followed by specifics, safety note, and return value. Every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters, an existing output schema (mentioned as summary), and no annotations, the description provides a complete picture of what the tool does, what it scans, its idempotency, and its purpose within the knowledge graph workflow.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters and schema coverage is 100%. The description confirms 'Takes no arguments,' which is sufficient. Baseline 4 is appropriate since no additional parameter meaning is needed.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool builds a knowledge graph from memory entries by linking shared topics. It lists the specific memory resources scanned and the output (bidirectional edges). This distinguishes it from sibling tools like kg_memory_connections and kg_paths.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description notes that it is safe to re-run with REPLACE semantics, implying idempotent usage. However, it does not explicitly state when to use this tool over alternatives or when not to use it, though the purpose is clear enough in context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

kg_memory_connectionsMetis โ€” KG Memory ConnectionsA

Find memory entries connected to a given entry via shared topics.

Uses the memory_links graph built by kg_index_memory(). BFS flood-fill
from the given entry up to `depth` hops.

Args:
    entry_type: Type of the starting entry: 'memory', 'episodic', 'semantic', or 'idea'.
    entry_id: ID of the entry (entry_id for memory, numeric id for others).
    depth: Maximum hop distance (default 2).

Returns:
    Connected entries grouped by distance, with their shared topics.
ParametersJSON Schema
NameRequiredDescriptionDefault
depthNo
entry_idYes
entry_typeYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses the algorithm (BFS flood-fill from a starting entry up to depth hops) and the return format (entries grouped by distance with shared topics). It implies a read-only operation. While it omits performance characteristics or potential side effects, the provided details are sufficient for a query tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a one-sentence purpose, a sentence on the underlying graph and algorithm, then a bullet-point Args section. Every sentence adds value, and the critical purpose is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema and no annotations, the description covers the algorithm, all parameter semantics, and the return format (grouped by distance with shared topics). It is complete enough for a tool that traverses a memory graph, requiring no additional information.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description includes an Args section that explains the meaning and allowed values for entry_type ('memory', 'episodic', 'semantic', or 'idea'), entry_id, and depth (default 2). This adds crucial meaning beyond the schema, which only has names and types. With 0% schema description coverage, the description fully compensates.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool finds memory entries connected via shared topics using BFS flood-fill. It identifies the starting entry and depth but does not explicitly differentiate from sibling tools like 'find_connections' or 'get_related_memories', though the algorithm mention (BFS, graph) provides implicit distinction.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage context: when you need connected memories via shared topics, using the graph built by kg_index_memory(). However, it does not provide explicit guidance on when to use this tool over alternatives, nor does it mention prerequisites or exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

kg_pathsMetis โ€” KG PathsA

Find connection paths between two knowledge library notes via BFS.

Args:
    from_path: Relative path from knowledge/library/ (e.g. 'concepts/elimination-framework.md')
    to_path:   Target note path.
    max_hops:  Maximum path length (default 4).

Returns all paths found up to max_hops, ranked by length.
ParametersJSON Schema
NameRequiredDescriptionDefault
to_pathYes
max_hopsNo
from_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses the algorithm (BFS), the max_hops parameter, and that results are ranked by length. With no annotations, this provides useful behavioral context. It does not mention performance characteristics or what happens when no path exists, but the core behavior is clear.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise: two sentences plus parameter list. The main purpose is front-loaded, and every sentence adds value. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given an output schema exists (though not detailed), the description adequately covers input parameters and behavior. It mentions the returned result (paths ranked by length). Minor gaps: no mention of error handling or path format, but sufficient for the tool's simplicity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description fully compensates for the 0% schema coverage by explaining each parameter: from_path includes an example relative path, to_path is described concisely, and max_hops states its default and purpose. This adds significant meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the tool finds connection paths between two knowledge library notes using BFS. The verb 'find' and resource 'connection paths' are specific. However, it does not differentiate from similar sibling tools like 'find_connections' or 'kg_memory_connections', which could cause confusion.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives such as 'search_library' or 'find_connections'. The description lacks context about prerequisites or typical use cases, leaving the agent without decision support.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_backupsMetis โ€” List BackupsA

List all backup files with size, age, and checksum availability.

Args:
    backup_dir: Directory to scan. Defaults to metis/system/backups/.

Returns JSON array, newest first.
ParametersJSON Schema
NameRequiredDescriptionDefault
backup_dirNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must stand alone. It discloses return format (JSON array, newest first) and default directory, but lacks explicit statements about safety (e.g., read-only) or potential side effects, which is acceptable for a simple list operation but not comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences plus argument breakdown. No fluff, front-loaded with purpose. Efficient use of space.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one optional parameter) and presence of an output schema, the description adequately covers purpose, parameters, and return structure (JSON array, newest first).

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so description adds meaning by explaining the purpose of backup_dir and its default value. This compensates well for the sparse schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it lists backup files with size, age, and checksum availability. The verb 'list' and resource 'backup files' are specific and distinct from sibling list tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus other list tools or alternatives. The description only states what it does without context for selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_basketMetis โ€” List BasketA

List files in the Metis basket (legacy & inspiration documents).

The basket is a flat holding area for any document kept as a reference for future work. The private/ subfolder is NEVER listed โ€” it contains personal or patient data.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses that private/ subfolder is never listed, adding behavioral context beyond a basic read operation. No annotations exist, so description carries full burden; it could mention read-only nature explicitly but does not mislead.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences, each purposeful: first states core function, second adds critical exclusion. No fluff or redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Completely describes a simple list tool with no params and an output schema; explains the basket concept and privacy constraint, sufficient for agent invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist in the schema, and schema coverage is 100%. Baseline of 4 applies; description adds no param info as none required.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description states specific verb+resource ('List files in the Metis basket') and distinguishes from sibling tools like 'list_folder' by defining the basket's role (legacy & inspiration documents) and explicitly excluding the private/ subfolder.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implies usage for listing basket files and notes the exclusion of private data, but does not explicitly compare to other list tools or provide when-not scenarios.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_brainstorm_sessionsMetis โ€” List Brainstorm SessionsB

List recent brainstorm sessions with title, turn count, and status.

Args:
    limit: Maximum sessions to return (default 20).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided; description does not state whether the tool is read-only, has side effects, or any behavioral constraints. Minimal information beyond the basic listing action.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise: two sentences plus parameter doc. No wasted words, front-loaded with purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple list tool with an output schema, the description adequately covers the return fields and parameter. Could mention what 'recent' means or edge cases (e.g., empty list), but overall sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates by explaining the 'limit' parameter (maximum sessions, default 20). This adds meaningful context beyond the schema's type/default.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'List' and the resource 'brainstorm sessions', and specifies the fields returned (title, turn count, status). It distinguishes from siblings like 'get_brainstorm_session' but doesn't explicitly differentiate from 'list_recent_sessions'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives like 'list_recent_sessions' or 'get_brainstorm_session'. Lacks context on prerequisites or filtering scope.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_contextsMetis โ€” List ContextsA

List all user contexts (general + specialist) with active status.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden for behavioral disclosure. It only states the action and result (list contexts with active status) but does not disclose that this is a read-only, idempotent operation, or any potential side effects, rate limits, or authentication needs.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence of 8 words, front-loading the key information. Every word is purposeful with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given a zero-parameter tool with an output schema, the description is complete. It states the action and the result (list all contexts with active status), which is sufficient for an agent to understand invocation and basic expectations.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Input schema has zero parameters, so baseline is 4. Description correctly implies no parameters are needed and adds no superfluous parameter info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the verb 'List' and the resource 'user contexts', specifying both general and specialist types and that active status is included. This distinguishes it from sibling tools like 'get_context' or 'toggle_context' by implying a full listing rather than a single context or toggling action.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives. There is no mention of when not to use it or when to prefer sibling tools like 'get_context' or 'toggle_context'.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_folderMetis โ€” List FolderA

List files in a folder.

Args:
    folder_path: Absolute path to the folder.
    pattern: Glob pattern to filter files (e.g. "*.R", "*.md"). Default: all files.
ParametersJSON Schema
NameRequiredDescriptionDefault
patternNo*
folder_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.5/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must convey behavioral traits. It only states the action without disclosing side effects, limitations (e.g., recursion, size limits), permissions, or read-only nature. Minimal transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is short and front-loaded with a clear purpose statement. The 'Args' section is minimal and directly adds value. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple tool purpose and the existence of an output schema, the description covers input parameters adequately. However, it lacks behavioral details like recursion behavior, but is otherwise complete for a basic file-listing operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description provides explicit descriptions for both parameters (folder_path and pattern), including the pattern format with examples. This adds meaningful context beyond the schema's default value and type.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'List files in a folder' with a specific verb and resource. Among many sibling tools like list_backups or list_basket, list_folder is distinct in its purpose of listing files in a file system folder.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives. No exclusions, prerequisites, or context for when it is appropriate to call list_folder over other listing or scanning tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_generated_imagesMetis โ€” List Generated ImagesA

List recently generated images in the PKM.

Reads from {pkm_root}/outputs/images/ directory.
Returns filename, date, and prompt (from JSON sidecar if present).

Args:
    limit: Maximum number of images to return (default 20, newest first).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must convey behavior. It indicates a read operation (reads from directory) and briefly describes the output (filename, date, prompt). However, it does not disclose sorting order beyond 'newest first' in the param, pagination, or side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise with three sentences, each adding value. It front-loads the purpose and efficiently covers directory, output fields, and parameter details.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple listing tool with one parameter and an output schema, the description covers the main points. However, it could mention sorting order explicitly and whether results are paginated beyond the limit. It is mostly complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% for the limit parameter; the description adds essential meaning: 'Maximum number of images to return (default 20, newest first).' This fully compensates for the lack of parameter documentation in the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'List recently generated images in the PKM' and specifies the directory path, making the purpose unambiguous. It is distinct from sibling listing tools like list_folder by focusing on generated images.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for retrieving recently generated images, but does not provide explicit guidance on when to use this tool versus alternatives, nor does it mention any exclusions or prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_knowledge_databasesMetis ยท Librarian โ€” List Knowledge DatabasesA

List all knowledge databases (layers) registered in Metis.

Shows built-in databases (PH background, HAT specialist, Epi methods) and any custom databases the user has created. Reports layer, document count, chunk count, and last build date.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It adequately describes what the tool returns (built-in and custom databases, fields like layer, document count, etc.), but does not mention any potential side effects, authentication needs, or rate limits. For a listing tool, this is sufficient but not exhaustive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with two short paragraphs. It front-loads the main action and resource, and every sentence adds necessary information without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters and an output schema present, the description provides sufficient context about what databases are listed and what fields are included. It is complete for a simple list tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

There are no parameters, so schema coverage is 100%. The description adds meaning by detailing the types of databases included and the specific fields reported, which is valuable beyond the empty schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists all knowledge databases (layers) in Metis, mentioning specific built-in and custom databases. It distinguishes from sibling tools like create_knowledge_database and build_pdf_knowledge_db by focusing on listing.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

While the purpose is clear, there is no explicit guidance on when to use this tool versus alternatives. The description implies its use for viewing the list, but no when-not or alternative tool mentions are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_recent_memoryMetis ยท Memory Curator โ€” List Recent MemoryA

Return the n most recent memory entries (default 10).

Useful at the start of a session to recall what was last worked on.

Args:
    n: Number of entries to return (default 10).
ParametersJSON Schema
NameRequiredDescriptionDefault
nNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It implies a read-only operation and recency ordering, but does not explicitly state read-only nature, permissions, or memory scope (global vs session). Adequate but could be more thorough.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences plus arg detail. Every sentence adds value. Purpose is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers purpose, usage, and parameter. Output schema exists to define return structure. Lacks specificity on memory scope (e.g., session vs persistent), but sufficient for a simple list tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Input schema has 0% description coverage for parameter 'n'. Tool description fully explains 'Number of entries to return (default 10)', adding essential meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description states 'Return the n most recent memory entries' with a clear verb and resource. The use case 'start of a session' distinguishes it from search or topic-specific siblings like search_memory or get_topic_memory.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly suggests use 'at the start of a session to recall what was last worked on'. However, no explicit when-not-to-use or alternatives are mentioned, though sibling differentiation is implied.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_recent_sessionsMetis ยท Memory Curator โ€” List Recent SessionsA

List the most recent session summaries, newest first.

Returns the rolling history of saved session summaries so you can pick up
where a previous conversation left off or review recent decisions and
topics. Each entry carries its summary, key topics, and decisions.
Complements search_session_memory (keyword search) and
save_session_summary (which writes these rows).

Args:
    limit: Maximum number of summaries to return, most recent first
        (default 20).

Returns:
    A list of session-summary dicts (id, session_id, summary, key_topics,
    decisions, created_at); a single-item list with an "error" key on failure.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It discloses the return format (list of dicts with specific keys) and error case (single-item error list). However, it does not mention any additional behavioral traits like rate limits, authorization requirements, or side effects. For a simple list operation, this is adequate but not exceptional.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise at around 150 words, with clear sections (purpose, usage, args, returns). Every sentence adds value, and there is no repetition of schema or annotations.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given low complexity (one optional parameter), no annotations, and an output schema, the description is complete. It covers purpose, usage context, parameter semantics, return structure, and error handling. It also references sibling tools for comparison.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The only parameter is 'limit,' with type integer, default 20. The description adds meaning: 'Maximum number of summaries to return, most recent first (default 20).' Since schema description coverage is 0%, the description fully compensates by explaining default behavior and ordering.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'List the most recent session summaries, newest first.' It specifies the verb (list), resource (session summaries), and ordering (newest first). It distinguishes from sibling tools by mentioning complementary tools like search_session_memory and save_session_summary.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use this tool, such as 'to pick up where a previous conversation left off or review recent decisions and topics.' It also notes that it complements search_session_memory and save_session_summary, providing context for selection. While it lacks explicit when-not-to-use guidance, the context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_research_entitiesMetis โ€” List Research EntitiesA

List all entities in the research timeline with their claim count and last update.

Use this to get an overview of what topics have tracked beliefs, before
drilling into a specific entity with query_research_timeline().
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses that it lists entities with claim count and last update, which is appropriate for a read-only list operation. However, it does not mention potential traits like pagination, performance, or safety, but given the simplicity of the tool, it is still transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long, with no waste. The first sentence states the core functionality, and the second provides usage guidance. It is front-loaded and efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simplicity (0 params, output schema exists), the description provides enough context: what it lists (entities, claim count, last update) and how it fits into a workflow (overview before drilling). No additional information is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters, so schema coverage is 100%. The description does not add parameter info because none exist. According to guidelines, 0 parameters yields a baseline of 4, which is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description specifies the verb 'list', the resource 'entities in the research timeline', and the included fields 'claim count and last update'. It clearly distinguishes itself from the sibling tool 'query_research_timeline' by positioning as an overview tool before drilling into specifics.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use: 'Use this to get an overview of what topics have tracked beliefs, before drilling into a specific entity with query_research_timeline()'. It names an alternative and implies when not to use (when you need detail on a specific entity).

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_supported_formatsMetis ยท Data Analyst โ€” List Supported FormatsA

List supported dataset formats and installed library versions.

Returns a JSON object with supported extensions, read/write capabilities, and the versions of pandas, openpyxl, and pyreadstat installed.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description adequately discloses behavior: it returns a JSON object with specified fields. It does not mention side effects, but none are expected for a read-only list tool. No contradictions with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences with no unnecessary words. The first sentence front-loads the action and subject, making it efficient and clear.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a zero-parameter tool with an output schema, the description covers all essential aspects: what is listed and the return structure. No further context is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has no parameters, and schema coverage is 100%. The description adds value by detailing the return format (extensions, capabilities, versions), which is absent from the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists supported dataset formats and library versions, with specific verb 'List' and resource. It differentiates from sibling tools like get_library_stats by focusing on formats and versions.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not provide when to use this tool versus alternatives or any exclusions. Usage is implied as a straightforward informational listing, but explicit context is missing.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

list_tool_groupsMetis โ€” List Tool GroupsA

List the tool groups that can be loaded on demand, with how many are parked.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the burden. It discloses that the tool lists tool groups and includes a count of parked ones, adding behavioral context beyond a simple 'list'. It does not mention side effects, but for a read-only list this is sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, well-structured sentence that conveys the core functionality without any unnecessary words. It is front-loaded and efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters and an existing output schema, the description fully captures what the tool does: listing tool groups with parked counts. No further context is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has zero parameters, and schema description coverage is 100%. The baseline for zero parameters is 4; the description adds no additional parameter info, which is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action 'list' and the resource 'tool groups that can be loaded on demand'. It adds a specific detail about counting parked groups, which distinguishes it from siblings like 'load_tool_group'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description does not explicitly state when to use this tool versus alternatives (e.g., load_tool_group). While the purpose is clear, no guidance on conditions or exclusions is provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

load_project_contextMetis โ€” Load Project ContextA

Load the full context block for a project โ€” ready to paste into Claude.

Returns the project's context_doc, recent session history, and next step
formatted as a structured brief. Use this at the start of any work session
on a specific project so Claude has full background.

Args:
    project_id: The project slug (e.g. "hat-dashboard", "article-1").
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It states the tool returns context_doc, session history, and next step. However, it does not disclose whether the tool is read-only, requires permissions, or has side effects. The description is truthful but lacks depth regarding behavioral traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise: two sentences of purpose and one for the parameter. Every sentence adds value, and critical info is front-loaded. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and an output schema, the description covers all necessary aspects: purpose, return values, usage timing, and parameter details. It is complete for its complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds a meaningful docstring for the single parameter, including a format example. Schema coverage is 0%, so the description compensates well by explaining the parameter's purpose and expected value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool loads the full context block for a project, specifying the verb 'load', the resource 'project context', and the purpose 'ready to paste into Claude'. It distinguishes from sibling context tools by focusing on project-specific context with a structured brief.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly recommends use at the start of any work session on a specific project. Provides clear context but does not mention when not to use or list alternative tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

load_tool_groupMetis โ€” Load Tool GroupA

Load every tool in a named group at once (see list_tool_groups for names).

Use this when you know you'll do several related operations โ€” e.g. group
"data" for a full dataset-cleaning session, "specialist" for DHIS2 work.
ParametersJSON Schema
NameRequiredDescriptionDefault
groupYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the entire burden. It states 'Load every tool' but does not explain what 'load' entails (e.g., side effects, resource usage, reversibility). This is insufficient for behavioral transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, both essential. The first sentence states the core action, the second provides usage guidance and examples. No filler or redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and an output schema (not shown), the description is minimally complete. It covers purpose and usage, but lacks details on what happens after loading. Adequate but could be improved.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It describes the 'group' parameter as a 'named group' and points to list_tool_groups for possible values, but does not specify format or constraints. Adequate but not comprehensive.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('Load every tool in a named group at once') and provides concrete examples (group 'data', 'specialist'). It references sibling tool 'list_tool_groups' for finding group names, aiding differentiation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises use for multiple related operations and gives concrete example scenarios. It does not explicitly state when not to use, but the context and reference to list_tool_groups provide sufficient guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

log_agent_runMetis โ€” Log Agent RunA

Log a completed agent run to the database for audit and dashboard tracking.

Records that an agent did a piece of work so it appears in the dashboard's
Agents view and in get_agent_runs. Call it after writing an output file, per
the output contract. When a session_id is supplied it also writes a "result"
event to session_events, closing the loop for /metis pipeline calls.

Args:
    agent_slug: Slug of the agent that performed the work (e.g. "librarian").
    task_summary: Brief description of what the agent did.
    input_path: Path to the input file(s), if any (default empty string).
    output_path: Path to the output file(s) produced, if any (default empty).
    complexity: The run status stored in the `status` column โ€” typically
        "completed", "partial", or "failed" (default "standard").
    input_tokens: Input tokens consumed, for cost tracking (default 0).
    output_tokens: Output tokens produced, for cost tracking (default 0).
    model: Model identifier used, e.g. "claude-sonnet-4-6" (default empty).
    session_id: Pipeline session ID from session_bootstrap(); when set, also
        records a result event in session_events (default empty string).

Returns:
    A confirmation message naming the agent and task that were logged.
ParametersJSON Schema
NameRequiredDescriptionDefault
modelNo
agent_slugYes
complexityNostandard
input_pathNo
session_idNo
output_pathNo
input_tokensNo
task_summaryYes
output_tokensNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description bears full burden. It discloses the logging action, dashboard appearance, and side effect of writing a session event when session_id is present. However, it does not specify idempotency, error behavior, or authentication requirements, leaving some ambiguity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with separate sections for purpose, usage, parameters, and returns. Each sentence contributes value, though slightly wordy. Front-loaded with the main action and purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (9 params, no annotations, output schema present), the description covers purpose, when to call, parameter details, return value, and side effects. It lacks error conditions and exact return format, but the output schema may fill those gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage, but the documentation-style parameter explanations add significant meaning, such as clarifying that 'complexity' maps to status values and that 'session_id' triggers an additional event. Some defaults (e.g., 'standard' for complexity) are slightly inconsistent with the listed statuses, but overall adds value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool logs a completed agent run for audit and dashboard tracking, with a specific verb ('Log') and resource ('agent run'). It distinguishes from siblings like get_agent_runs and other logging tools by emphasizing the 'completed run' context and integration with the dashboard and session events.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly advises to call it 'after writing an output file, per the output contract' and explains the conditional behavior when session_id is supplied. No explicit exclusions or alternatives are provided, but the context is clear enough for proper use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

log_spanMetis โ€” Log SpanA

Record a completed span in one call (no separate start/end needed).

Useful for logging retrospective timing data (e.g. 'that DB query took 42ms').

Args:
    name:        Span label.
    duration_ms: How long the work took in milliseconds.
    kind:        'internal' | 'tool' | 'agent' | 'llm'. Default: 'internal'.
    session_id:  Session identifier. Optional.
    run_id:      FK to agent_runs. Optional.
    parent_id:   Parent span_id. Optional.
    status:      'ok' | 'error'. Default: 'ok'.
    tags:        JSON string of metadata. Optional.

Returns the new span_id.
ParametersJSON Schema
NameRequiredDescriptionDefault
kindNointernal
nameYes
tagsNo
run_idNo
statusNook
parent_idNo
session_idNo
duration_msYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. Discloses that it records a span and returns a span_id. Does not cover side effects, idempotency, or storage behavior. Adequate but could be more comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise and well-structured. Starts with a clear summary sentence, then lists parameters in a readable format. No unnecessary information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers the main use case and parameter details. Mentions return value (span_id) despite output schema existing. Could discuss error handling or constraints, but overall complete for a write operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description compensates by listing all 8 parameters with clear one-line explanations. Adds significant meaning beyond the schema's titles and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it records a completed span in one call, distinguishing from a start/end two-call approach. The sibling tools include start_span and end_span, so the description effectively differentiates.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides context for when to use (retrospective timing data) and implies alternative of separate start/end calls. Does not explicitly list when not to use, but the single-call distinction is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

mark_publications_readMetis ยท News Radar โ€” Mark Publications ReadA

Mark new publications as read by their IDs.

Clears items from the "new publications" queue once the user has seen them,
stamping each with a read time so they stop resurfacing. Use the IDs
returned by get_new_publications.

Args:
    ids: List of new_publications row IDs to mark as read; an empty list is
        a no-op.

Returns:
    A confirmation message with the count of publications marked as read.
ParametersJSON Schema
NameRequiredDescriptionDefault
idsYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It discloses that the tool clears items from the 'new publications' queue, stamps a read time, and that an empty list is a no-op. These behavioral insights are valuable beyond the schema.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: a single sentence plus structured Args and Returns sections. Every sentence adds value. It front-loads the core purpose and efficiently covers necessary details.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple tool (1 required param, output schema exists), the description covers purpose, usage context, parameter semantics, and return value. It ties to the sibling tool 'get_new_publications' and explains the effect. No gaps remain.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 1 parameter 'ids' with no description (0% coverage). The description adds meaning: 'List of new_publications row IDs to mark as read; an empty list is a no-op.' This explains source of IDs and special behavior, compensating for the schema's lack of documentation.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Mark' and resource 'new publications', and specifies it operates by IDs. It explains the effect: clearing from the queue and stamping read time. It distinguishes from sibling 'get_new_publications' by being the counterpart to mark items as read.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description explicitly says 'Use the IDs returned by get_new_publications', providing clear context for when to use this tool. It implies the workflow: get new publications then mark them read. It doesn't mention when not to use or alternatives, but the context is sufficient for correct invocation.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

metis_doctorMetis โ€” Metis DoctorA

Run a one-screen health check on Metis.

Verifies Python version, the SQLite database, the Anthropic API key, your
user-config.yaml, agent and skill folders, folder-rename hygiene, MCP
imports, and that `.env` is gitignored. Returns a structured report so the
dashboard or a CLI session can render it cleanly.

Use when:
  - Something feels broken and you want a single command to triage.
  - Just before publishing the repo, to catch hygiene issues.
  - After a `git pull`, to confirm nothing regressed.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It transparently lists the checks performed and notes that it returns a structured report. There is no mention of side effects, but as a read-only diagnostic, this is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with the main purpose front-loaded. It uses bullet points for use cases, making it easy to scan. Every sentence adds value; no extraneous text.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given zero parameters and the presence of an output schema (per context signals), the description fully covers the tool's purpose and when to use it. The mention of a 'structured report' is sufficient for an agent to understand the output.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has zero parameters, so no parameter description is needed. Schema coverage is 100%. The description does not waste space on parameters, earning the baseline score of 4 for no-parameter tools.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Run a one-screen health check on Metis' and lists specific items checked (Python version, SQLite database, API key, etc.), making the purpose explicit and distinguishing it from sibling tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear use cases: 'when something feels broken', 'just before publishing', and 'after a git pull'. It does not explicitly state when not to use it, but the guidance is sufficient for typical scenarios.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

mine_referencesMetis ยท Librarian โ€” Mine ReferencesA

Mine reference lists of specific articles.

Fetches references for one or more DOIs (comma-separated) via CrossRef,
checks against your Zotero library, and reports what's missing.

Args:
    dois:  Comma-separated list of DOIs to mine.
    label: Optional label for the output file.
ParametersJSON Schema
NameRequiredDescriptionDefault
doisYes
labelNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses that it fetches references via CrossRef, checks against Zotero, and reports missing items. However, it does not mention potential side effects, rate limits, authentication requirements, or error handling.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with only four lines. It is front-loaded with the main purpose, and each subsequent sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given that an output schema exists, the description does not need to explain return values. It covers inputs and process adequately. A brief mention of output content could enhance completeness but is not required.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must add meaning. It describes 'dois' as a comma-separated list of DOIs and 'label' as an optional output file label, adding practical context beyond the schema's type and title.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb (mine/fetches/checks/reports), resource (reference lists of specific articles), and specific actions (via CrossRef, against Zotero library). It distinguishes this tool from siblings like search_library or scan_literature by focusing on mining references from DOIs.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for fetching references from DOIs and checking against Zotero, but does not explicitly state when to use this tool vs alternatives or provide exclusions. No guidance on when not to use it is given.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

next_discovery_tipMetis โ€” Next Discovery TipA

Return ONE earned, not-yet-shown feature tip for the current moment (or '').

Call at natural trigger moments (user starts a project, writes R code, builds a
library, asks a knowledge question, handles a datasetโ€ฆ). Pass `context` as
comma-separated trigger tags. Returns at most one tip โ€” and ONLY for a feature the
user does NOT already use (earned discovery), respecting the off/snooze/power-user
settings and a frequency cap (โ‰ค1 tip / 20 min, โ‰ค3 / day). Records it so it never
repeats. Returns '' when nothing should be shown. Weave the tip in naturally.

Args:
    context: comma-separated trigger tags describing what the user is doing.
ParametersJSON Schema
NameRequiredDescriptionDefault
contextNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses rate limiting (โ‰ค1 tip/20 min, โ‰ค3/day), respects user settings (off/snooze/power-user), records to avoid repeats, and returns empty string when nothing to show. Does not mention side effects but operation is read-like and non-destructive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is about 120 words, front-loads purpose, and every sentence adds value. Minor redundancy in emphasizing 'earned discovery' but overall efficient and well-structured.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (1 optional param, no required, output schema exists), the description covers behavior, return values, when to call, and constraints. No additional information needed; output schema handles return value details.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has one optional parameter 'context' with no description in schema (0% coverage). Description explains it as 'comma-separated trigger tags describing what the user is doing', adding essential meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states that it returns one earned, not-yet-shown feature tip or empty string. Verb 'return' and resource 'feature tip' are specific. No sibling tools with similar purpose exist, so it is well-distinguished.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description lists explicit natural trigger moments (e.g., user starts a project, writes R code) and instructs to pass context as comma-separated tags. Does not explicitly state when not to use, but the context implies limited applicability. No alternative tool is mentioned, but no sibling tool serves a similar function.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

_obsidian_vaultMetis โ€” Obsidian VaultA

Resolve the configured Obsidian vault path, if one is set and valid.

Looks up the user's external Obsidian vault so note-indexing tools
(e.g. kg_index_notes) know where to read .md notes from. Checks the
METIS_OBSIDIAN_VAULT environment variable first, then the
integrations.obsidian_vault (or top-level obsidian_vault) key in
user-config.yaml.

Takes no arguments.

Returns:
    A Path to the vault directory if it is configured and exists on disk,
    otherwise None.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses lookup order (env var, config file) and return value (Path or None). No annotations exist, so description carries full burden, and it covers the read-only behavior well.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Efficiently structured: states purpose, motivation, technical details, and return type. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Complete for a zero-parameter tool with output schema. Covers all necessary aspects: configuration sources, return behavior, and integration context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters, so default is 4. Description does not need to add parameter info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it resolves the Obsidian vault path, distinguishing it from note-indexing siblings like kg_index_notes. Uses specific verb 'resolve' and resource 'Obsidian vault path'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explains it is used by note-indexing tools, providing context for when it might be called. Does not explicitly state when an agent should call it directly or mention alternatives, but the context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

probe_tool_resultMetis ยท Data Guardian โ€” Probe Tool ResultA

M5.7.1 โ€” Probe external tool result for injection patterns.

Call this before inserting any externally-sourced content into agent context:
web scrapes, RSS items, PDF extracts, YouTube transcripts, GitHub readmes.

Args:
    content: The external content to probe.
    source_label: Human-readable label for logging (e.g., "PubMed abstract", "RSS item").

Returns:
    JSON with {probed_content, flagged, patterns_found}.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
source_labelNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description is the sole source. It describes a non-destructive probe (returns flagged/patterns_found) but does not explicitly state it is read-only or safe. Lacks detail on logging side effects or performance implications.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with version header, purpose, usage, args, and returns. Concise with no extra fluff. Could be slightly more streamlined but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Provides enough context given the simple nature of the tool: clear what it does, when to use, and what to expect in returns (probed_content, flagged, patterns_found). No missing critical information for an AI agent to use it correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description explains both parameters: 'content' as the external content to probe and 'source_label' for logging. This adds significant meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool probes external content for injection patterns and gives specific use cases (web scrapes, RSS, etc.), making the purpose distinct from many sibling tools. However, it doesn't explicitly differentiate from close siblings like 'check_data_safety'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly instructs to call this before inserting externally-sourced content into agent context, with concrete examples. Does not mention when not to use or alternatives, but the usage guidance is clear and actionable.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

profile_datasetMetis ยท Data Analyst โ€” Profile DatasetA

Profile a tabular dataset: shape, dtypes, null %, unique counts, distributions.

Supports CSV, TSV, Excel (.xlsx/.xls), SPSS (.sav), Stata (.dta).
Performs PII column name scan before profiling (non-blocking, annotated).
Never modifies the source file.

Args:
    path:        Absolute local path to the dataset file.
    sample_rows: If > 0, include this many rows as a data sample in the output.

Returns JSON with: path, rows, columns, null stats, duplicate count,
per-column profile (dtype, nulls, distributions or top values),
and any flagged PII column names.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes
sample_rowsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description fully carries transparency. It discloses the tool never modifies the source file, performs a non-blocking PII column name scan, and returns a JSON structure with specific fields. This provides good insight into behavior, though no mention of permissions or rate limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (about 10 lines), with a clear structure: purpose statement, supported formats, behavioral notes, and an Args section. Every sentence adds value; no fluff. Front-loaded with main action.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists (though not shown) and only two simple parameters, the description covers essential aspects: supported formats, safety, PII scan, and return structure. It does not elaborate on every output field but that is acceptable with an output schema present.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so parameter descriptions in the tool description are critical. The description provides clear explanations: 'path' as absolute local path, 'sample_rows' as including rows in output if > 0. This adds significant meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description explicitly states the verb 'Profile' and the resource 'tabular dataset', detailing specific outputs (shape, dtypes, null %, unique counts, distributions). It also lists supported formats and a PII scan, clearly differentiating from sibling tools like clean_dataset (which modifies) and compare_profiles (which compares).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description indicates when to use by specifying supported file formats and emphasizing it never modifies the source file, implying safe profiling. While it does not explicitly contrast with alternatives, the context of sibling tools makes the tool's role clear. No explicit 'when not to use' statement, but the guidance is adequate.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

promote_basket_itemMetis โ€” Promote Basket ItemB

Move a basket item to a stable project folder (promote from basket to active storage).

Refuses to touch basket/private/ items.

Args:
    source_path: Absolute path to the file in basket/ to promote.
    target_path: Absolute destination path (file or folder).
ParametersJSON Schema
NameRequiredDescriptionDefault
source_pathYes
target_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It only discloses one behavioral trait (refuses private items). Missing details such as permissions, reversibility, and overwrite behavior, leaving significant gaps.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: three sentences plus arg list, front-loaded with the action verb, and no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the absence of annotations and 0% schema coverage, the description provides the core action and a key constraint. However, it lacks details on error handling, return values, and collision behavior, assuming the output schema covers return. Adequate but not thorough.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds clear meaning beyond schema titles: defines source as 'absolute path to the file in basket/' and target as 'absolute destination path (file or folder).' This compensates for the 0% schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('move') and the resource ('basket item to stable project folder'). It differentiates from sibling tools like list_basket and scan_folder_for_intent by focusing on promotion, but does not explicitly distinguish itself.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description notes that it refuses to touch basket/private/ items, providing a usage constraint. However, it does not specify when to use this tool over alternatives or give explicit prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

propose_library_organizationMetis ยท Librarian โ€” Propose Library OrganizationA

Cluster papers by topic and propose an AI-generated collection structure.

Uses abstracts and titles to embed papers, then clusters them with k-means.
Returns a proposed collection structure with suggested names and paper counts.

Args:
    n_clusters: Number of topic clusters. 0 = auto-detect (sqrt of library size).
    min_papers: Minimum papers per cluster to report (default 3).
ParametersJSON Schema
NameRequiredDescriptionDefault
min_papersNo
n_clustersNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description discloses the algorithm and parameter effects but omits side effects, permissions, or whether it is read-only.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise: three short paragraphs covering purpose, method, and parameters without extraneous details.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description adequately covers the tool's behavior and parameters, though it could mention prerequisites or safety.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds meaning to both parameters (n_clusters auto-detect at 0, min_papers default 3) beyond the schema, which has 0% coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it clusters papers and proposes a collection structure, distinguishing it from sibling tools like search or list operations.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains how the tool works (k-means on embeddings) but does not explicitly state when to use it or when to prefer alternatives like search_library.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

propose_skill_improvementMetis โ€” Propose Skill ImprovementA

An agent proposes a change to its own skill file.

The proposal is queued for human review. The skill file is NOT modified
until the user calls approve_proposal().

Args:
    agent_slug: The agent's slug (e.g. 'librarian', 'writing-partner')
    proposed_content: The full proposed replacement content of the skill file
    rationale: Why this change is being proposed (1โ€“3 sentences)

Returns:
    Confirmation with the proposal ID for the user to review
ParametersJSON Schema
NameRequiredDescriptionDefault
rationaleNo
agent_slugYes
proposed_contentYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden for behavioral disclosure. It states the proposal is queued and not directly applied, and returns a proposal ID for review. However, it does not mention any side effects, required permissions, or limits on pending proposals, which would enhance transparency for a mutation-like tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (6 lines), well-structured with a brief statement of purpose followed by Args and Returns sections. Every sentence adds value without repetition or fluff. Front-loaded with the key point about queuing and human review.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (3 parameters, no nested objects, output schema exists), the description adequately covers the workflow and return value. It could mention what happens after approval or rejection, or how to retrieve the proposal ID later, but it is complete enough for an AI agent to understand the proposal cycle.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description includes an Args section that explains each parameter: agent_slug with examples, proposed_content as full replacement, and rationale with length guidance. This adds significant meaning beyond the schema's type/title, especially for rationale (schema has only default empty string).

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'proposes' and the resource 'change to its own skill file', and distinguishes it from direct modification by explicitly referencing approve_proposal(). The title includes 'Metis โ€” Propose Skill Improvement', further clarifying the domain and action.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains that the proposal is queued for human review and not applied until approve_proposal() is called. This provides clear guidance on when to use this tool (to propose changes) and when not (for immediate effect, use approve_proposal). It references the approval step but does not explicitly compare with other sibling tools like draft_self_improvement_proposal.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

publish_courseMetis ยท Course Builder โ€” Publish CourseA

Finalise and publish a completed course build.

Marks the learning_courses row as 'active', sets progress to 0,
and writes a completion note. Call after all 7 steps are done.

Args:
    slug: The course slug to publish.

Returns:
    Confirmation with the course path and Learning tab link.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It describes key side effects: setting row to active, resetting progress, and writing a note. However, it does not mention permissions needed, reversibility, or error conditions. Adequate but not exhaustive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is brief, front-loaded with purpose, followed by implementation details, then parameter and return info. Every sentence is meaningful with no waste.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple parameter and presence of an output schema, the description covers the essential usage. It provides context about being after 7 steps. Missing details about what '7 steps' are or prerequisites, but still complete enough for an experienced user.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description compensates by listing the parameter and its purpose: 'slug: The course slug to publish.' This adds meaning beyond the schema's type-only definition.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses specific verb 'Finalise and publish' and identifies the resource as 'completed course build'. It clearly states the actions performed: marks as active, sets progress to 0, writes completion note. This distinguishes it from sibling tools like 'get_course_status' or 'review_course'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states 'Call after all 7 steps are done', providing clear guidance on when to use. It also implies the course must be completed. However, it does not explicitly state when not to use, but the context is clear enough.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

query_research_timelineMetis โ€” Query Research TimelineA

Query the temporal evolution of research beliefs.

Returns all claims for an entity ordered by date, showing how thinking
evolved. Superseded claims (older beliefs you updated) are hidden by default
but can be shown to trace the full reasoning chain.

Args:
    entity: Filter by entity name (partial match). Leave empty to see all
        recent entries across all entities.
    since_date: ISO date string (YYYY-MM-DD). Only show entries on or after
        this date. Leave empty for all time.
    show_superseded: If True, include claims that have been replaced by newer
        ones. Default False โ€” shows only the current belief for each topic.
ParametersJSON Schema
NameRequiredDescriptionDefault
entityNo
since_dateNo
show_supersededNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description carries full burden. It covers filtering behavior and defaults but does not explicitly state that the tool is non-destructive or read-only. The behavioral traits are mostly clear, but some aspects (like side effects) are implied rather than stated.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured: a concise one-sentence summary, followed by a brief behavioral paragraph, then parameter documentation. No unnecessary words; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists (returns not needed), the description covers purpose, parameters, and behavior completely. It explains the superseded concept and filtering options, leaving no obvious gaps for an agent to select and invoke the tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must compensate. It provides clear, detailed semantics for all three parameters: entity (partial match), since_date (ISO format), show_superseded (boolean, defaults to False). This adds significant value beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses specific verb 'query' and resource 'research beliefs', highlighting temporal evolution and superseded claims. It clearly distinguishes this tool from siblings like search_memory or get_research_context by focusing on chronological ordering and belief history.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains default behavior (superseded hidden) and when to show them (to trace reasoning). It implies context for usage but does not explicitly state when to prefer alternatives. Good but could be more thorough.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

read_fileMetis โ€” Read FileA

Read the content of a file and return it as text.

Works for any text file: R scripts, markdown, Python, JSON, CSV, etc.
The file does not need to be pre-registered in tracked_files.

Args:
    path: Absolute path to the file to read.
    max_chars: Maximum characters to return (default 8000). For large files,
               increase this or ask for a specific section.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes
max_charsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses that it returns text and has a max_chars default, but lacks details on error handling, encoding, or behavior for binary files. The description adds moderate value beyond what the schema provides.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is fairly concise with a clear two-line summary and an Args section. The first sentence could be combined with the second, but overall it is well-structured and front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simple nature of the tool and the presence of an output schema, the description covers purpose, file types, and parameter defaults. It does not mention output format explicitly, but that is likely defined in the output schema. It is mostly complete for a read tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must compensate. It provides prose explanations for both parameters (path and max_chars), including usage guidance for large files. This adds significant value beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool reads file content and returns text, lists supported text file types, and notes that files need not be pre-registered. This differentiates it from sibling tools like scan_tracked_files or list_folder.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description specifies it works for any text file and that the file doesn't need pre-registration, giving clear context. However, it does not explicitly state when not to use it (e.g., for binary files or metadata), and no alternatives are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

recallMetis ยท Memory Curator โ€” RecallA

Search across ALL memory layers in one call.

The unified front door to everything Metis remembers โ€” personal notes,
agent findings, project decisions, PDF knowledge, ideas, and session
history. Returns ranked results with source attribution.

Searches up to 6 layers and merges results using Reciprocal Rank Fusion:
  1. Memory palace (memory_entries โ€” keyword)
  2. Episodic memory (events โ€” vector + keyword)
  3. Semantic memory (concepts โ€” vector + keyword)
  4. Procedural memory (workflows โ€” vector + keyword)
  5. Knowledge databases (PDF chunks โ€” vector)
  6. Ideas (ideas table โ€” keyword)

Use scope/agent_id/project_id to narrow results:
  recall("HAT diagnostics")                          โ†’ everything
  recall("search patterns", agent_id="librarian")    โ†’ librarian's wisdom
  recall("elimination", project_id="article-1")      โ†’ Article 1 decisions
  recall("mixed models", scope="global")             โ†’ cross-cutting knowledge

Args:
    query: Natural language search query.
    scope: Filter by scope: 'global', 'agent', 'project', 'session'.
        Empty string (default) searches all scopes.
    agent_id: Filter to memories from a specific agent (e.g. 'librarian').
    project_id: Filter to memories linked to a specific project.
    layers: Comma-separated layers to search. Options: 'memory', 'episodic',
        'semantic', 'procedural', 'knowledge', 'ideas', or 'all' (default).
    top_k: Number of results to return (default 10).
    recency_half_life: Days until recency boost halves (default 90). Set to 0
        to disable recency weighting. A 90-day-old entry gets ~37% of a
        fresh entry's time bonus; 180-day ~14%.

Returns:
    Ranked results from across all matching layers, each with its source
    layer, relevance score, timestamp, and content preview.
ParametersJSON Schema
NameRequiredDescriptionDefault
queryYes
scopeNo
top_kNo
layersNoall
agent_idNo
project_idNo
recency_half_lifeNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully covers behavioral traits: it searches 6 memory layers, uses Reciprocal Rank Fusion, returns ranked results with source attribution, and explains recency weighting with a half-life parameter. There is no destructive action implied, and the merging mechanism is transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a summary line, explanation, examples, and parameter list. It is longer than minimal but every sentence adds value; the examples and parameter details are necessary for clarity. Slightly less than perfect conciseness due to length.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (7 parameters, no annotations, an output schema exists but description still covers return values), the description is complete. It explains all parameters, behavior, merging strategy, and return format, leaving no critical gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the description compensates fully by detailing each parameter: query, scope, agent_id, project_id, layers, top_k, and recency_half_life, including default values and examples. This provides rich semantic meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description immediately states 'Search across ALL memory layers in one call' with a clear verb and resource. It distinguishes itself from sibling search tools (e.g., search_memory, search_session_memory) by positioning as the unified front door that covers 6 specific layers, making its purpose unmistakable.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides explicit usage examples showing how to narrow results using scope, agent_id, and project_id, and implies broad vs. narrowed use. It does not explicitly mention when not to use it or list alternative tools, but the context is clear enough for an agent to decide.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

recall_decisionsMetis โ€” Recall DecisionsA

Recall the user's recorded preferences/decisions to personalize a response. Called during context assembly (and any time Metis is about to act in a way a preference might govern). Empty category returns all categories.

Args:
    category: filter to one category, or '' for all.
    limit: max rows.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
categoryNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry the full burden. It mentions that an empty category returns all categories, which is a useful behavioral detail. However, it does not disclose whether the operation is read-only, any required permissions, or what the response contains beyond the output schema.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is short and front-loaded: it states the purpose, then usage context, then parameter descriptions. Every sentence is necessary, no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given that an output schema exists, the description does not need to detail return values. It covers purpose, usage, and parameters adequately. However, it could mention that it returns only user-recorded decisions, which is implied but not explicit.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description fully explains both parameters: category ('filter to one category, or \'\' for all') and limit ('max rows'). This adds essential meaning beyond the schema's type and default values.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states that the tool recalls recorded preferences/decisions for personalization, using the specific verb 'recall' and resource 'preferences/decisions'. It also notes it is called during context assembly, distinguishing it from sibling tools like 'remember' or 'write_user_preferences'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly says when to use: 'during context assembly (and any time Metis is about to act in a way a preference might govern)'. It does not provide exclusions or alternatives, but the context is clear enough for an agent to decide.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

record_dataset_treatmentMetis ยท Software Engineer โ€” Record Dataset TreatmentA

Record one cleaning/transformation step for a dataset (its lineage).

Build a traceable chain raw โ†’ cleaned โ†’ analysis dataset, so any result can
be reproduced. Call once per step (recode, filter, join, derive, โ€ฆ).

Args:
    dataset_name: The dataset being transformed.
    description: What this step does (e.g. "drop records with missing age").
    project_id: Project this belongs to. Optional.
    step_type: recode | filter | join | derive | clean | other.
    code: The code for this step, if any.
    input_dataset: Dataset(s) this step consumes.
    output_dataset: Dataset this step produces.
ParametersJSON Schema
NameRequiredDescriptionDefault
codeNo
step_typeNo
project_idNo
descriptionYes
dataset_nameYes
input_datasetNo
output_datasetNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry the behavioral disclosure burden. It explains the purpose (building a traceable chain) and that it should be called per step, implying additive and non-destructive behavior. However, it does not state idempotency, error handling, or whether it modifies existing data. The traceability context provides moderate transparency.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is brief (about 7 lines) and front-loaded with the core purpose. Every sentence contributes meaning: purpose, traceability rationale, usage hint, parameter explanations. No unnecessary words or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (recording a step), the description covers purpose, usage pattern, and parameter meanings. An output schema exists (so return values need not be explained), and the description does not cover error scenarios or prerequisites, but those are less critical for a recording tool. It adequately equips an agent to invoke the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description is essential. The 'Args' section (in the description text, not the schema) explains each parameter's role, including an example for 'description' and valid values for 'step_type'. This adds significant meaning beyond the schema's parameter names, though more constraints (e.g., format for 'code') could be added.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the tool records a cleaning/transformation step for dataset lineage. It uses a specific verb ('Record'), identifies the resource ('one cleaning/transformation step for a dataset'), and distinguishes itself from sibling tools like 'clean_dataset' (which performs cleaning) by emphasizing traceability and reproducibility.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises 'Call once per step' and provides examples of step types (recode, filter, join, derive, โ€ฆ). It implies this tool is for recording rather than executing steps, but lacks explicit guidance on when not to use it or alternatives among siblings (e.g., 'clean_dataset', 'profile_dataset'). Clear but could be more explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

record_decisionMetis โ€” Record DecisionA

Record a user preference or decision so Metis adapts to the user over time.

Use this whenever the user states (or confirms) a standing preference or makes a
decision worth remembering โ€” coding style, citation format, a methods default, an
article/dataset they keep returning to, a naming convention, a workflow choice.
These are recalled into context on future requests (recall_decisions), so Metis
personalizes instead of asking again.

Args:
    decision: the preference/decision in plain language (e.g. "Always use tidyverse style in R, never base apply").
    category: preference | coding | citation | methodology | writing | article-ref | dataset | routing | other.
    context: optional โ€” when/why it applies (e.g. "for HAT spatial analyses").
    scope: 'always' (persist) or 'once'.
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNoalways
contextNo
categoryNopreference
decisionYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Describes that decisions are 'recalled into context on future requests', indicating persistence. The scope parameter ('always' vs 'once') is explained in param semantics, adding behavioral detail. No annotations are provided, so the description carries the burden; it covers persistence and adaptability well.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a clear opening sentence, usage guidelines, and a parameter list. It could trim slightly but remains efficient and front-loaded with purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's low complexity, the description fully covers purpose, usage, parameters, and behavioral implications. The existence of an output schema reduces the need to detail return values. No gaps remain for effective agent invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema description coverage, the description provides thorough explanations for all four parameters: decision (plain language example), category (enumerated values), context (optional applicability), and scope (persist vs once). This adds critical meaning beyond the schema structure.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Record' and the resource 'user preference or decision', with a purpose ('so Metis adapts to the user over time'). It distinguishes itself from sibling tools like 'recall_decisions' and 'add_memory_entry' by focusing on decisions/preferences and referencing how they are recalled.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit guidance on when to use ('whenever the user states a standing preference or makes a decision worth remembering') with concrete examples. Does not explicitly state when not to use or list alternatives, but the context and sibling list imply differentiation. Lacks full exclusionary guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

record_research_findingMetis โ€” Record Research FindingA

Record a timestamped research belief or finding about an entity.

Use this whenever you reach a conclusion, update a previous belief, or
encounter evidence that changes your view. The timeline preserves the full
chain of reasoning across sessions.

Args:
    entity: What this claim is about. Use a consistent name across sessions
        (e.g. "RDT sensitivity in low-burden areas", "Disease X elimination study",
        "DHIS2 tracker performance").
    claim: Your current belief or finding in 1-3 sentences.
    evidence: What supports this claim โ€” paper citation, data result, meeting
        discussion. Brief reference is enough.
    confidence: "low", "medium", or "high".
    source_type: "session", "paper", "meeting", "data_analysis", "literature_review".
    source_ref: Specific reference โ€” DOI, file path, meeting date.
    supersedes_id: If this replaces a previous claim, pass that claim's id.
        Set to 0 if this is a new claim with no predecessor.
ParametersJSON Schema
NameRequiredDescriptionDefault
claimYes
entityYes
evidenceNo
confidenceNomedium
source_refNo
source_typeNosession
supersedes_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully covers behavior: records timestamped beliefs, preserves a timeline, and explains the supersedes_id mechanism. It lacks details on permissions or error handling but discloses the core traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is front-loaded with a summary and usage context, followed by a structured parameter list. It is slightly long but each sentence adds value; no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 7 parameters and no annotations, the description covers all inputs comprehensively, explains the timeline feature, and mentions superseding. It does not discuss output format, but an output schema exists.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description provides detailed explanations for all 7 parameters, including usage guidance (e.g., consistent entity names, confidence values, source types). This compensates for the 0% schema coverage, adding significant meaning.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states 'Record a timestamped research belief or finding about an entity,' using a specific verb and resource. It distinguishes from siblings like 'record_decision' and 'capture_idea' by focusing on research findings and the timeline of reasoning.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear usage context: 'Use this whenever you reach a conclusion, update a previous belief, or encounter evidence that changes your view.' It does not explicitly contrast with siblings, but the purpose is well-defined.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

record_routing_preferenceMetis โ€” Record Routing PreferenceA

Active-learning routing. After Metis asks the user 'should I always route requests like this to , or just this once?', call this with their answer.

scope='always' writes a permanent, high-priority rule (beats the built-in seeds)
into the routing DB โ€” part of institutional memory, persists across Metis updates.
scope='once' is acknowledged but not stored.

Args:
    phrase: the trigger word/phrase the user wants routed (e.g. "spatial scan").
    agent_slug: which agent to route it to (e.g. "epidemiologist").
    scope: 'always' (persist) or 'once' (don't store).
    priority: lower = more specific / checked first (default 5 beats all seeds).
ParametersJSON Schema
NameRequiredDescriptionDefault
scopeNoalways
phraseYes
priorityNo
agent_slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description effectively discloses key behaviors: scope='always' persists permanently with high priority, scope='once' is acknowledged but not stored, and the priority default beats seeds. It does not mention what happens with conflicting rules, but is transparent enough for the tool's simplicity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise, around 100 words, with a clear introductory sentence followed by a structured Args list. Every sentence contributes meaningful information, no fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity and the presence of an output schema (not shown but noted), the description provides sufficient context. It covers the core behavior and parameters, though some edge cases (e.g., duplicate rules) are left unaddressed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must add meaning. It explains each parameter: phrase (trigger word), agent_slug (target agent), scope ('always' vs 'once'), and priority (lower = more specific, default 5 beats seeds). This adds significant value beyond the schema's type/default information.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: recording the user's answer to Metis' routing preference question. It specifies the verb ('call this with their answer') and the resource (the routing preference). This distinguishes it from sibling tools, which are mostly unrelated.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use the tool: after Metis asks the routing question. While it doesn't list alternatives or when not to use it, the context is very specific and leaves little ambiguity.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

record_thinking_eventMetis โ€” Record Thinking EventA

Record one signal about how you think and work, to personalise Metis.

Each event is a small piece of evidence โ€” you acted on a brainstorm, rated
an idea highly, flagged an agent's output โ€” that feeds your evolving
"thinking profile". Over time these signals let Metis tailor its routing,
suggestions, and tone to your preferences. Call it whenever a meaningful
preference moment occurs; read the accumulated profile with
get_thinking_profile.

Args:
    event_type: The kind of signal. Must be one of: "brainstorm_acted_on",
        "brainstorm_ignored", "idea_rated_high", "idea_linked_project",
        "journal_revisited", "agent_output_accepted", "agent_output_flagged".
    source_type: Domain or category the signal belongs to (e.g. "biology").
        Optional; defaults to empty.
    content_id: ID of the related content record (idea, journal entry, etc.)
        if applicable. Optional; defaults to 0 (none).
    agent_slug: Agent identifier this signal relates to, used for the
        "agent_output_*" event types. Optional.
    context: Free-text note giving context for the event. Optional.

Returns:
    A confirmation that the signal was recorded, or an error listing the
    valid event types if an invalid one was supplied.
ParametersJSON Schema
NameRequiredDescriptionDefault
contextNo
agent_slugNo
content_idNo
event_typeYes
source_typeNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description fully covers behavior: it records a signal, returns confirmation or error for invalid event_type, and explains the long-term effect. This is transparent and complete.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with an intro, purpose, usage guidance, parameter list, and return info. Every sentence adds value, making it informative without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the parameter count (5), one required, and an output schema, the description covers behavior, parameters, return values, and usage. It is complete for a recording tool with clear context and no gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description includes an 'Args' section explaining each parameter, defaults, and constraints. This adds significant value beyond the schema, especially for event_type with its explicit list.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool records a signal about thinking and working to personalize Metis. It lists specific event types and explains how it feeds a thinking profile, distinguishing it from related tools like get_thinking_profile.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises to call it 'whenever a meaningful preference moment occurs' and points to get_thinking_profile for reading the profile. It does not explicitly state when not to use alternatives, but the examples and context provide clear guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

redact_data_fileMetis ยท Data Guardian โ€” Redact Data FileA

Read a sensitive data file and return a REDACTED preview (masked values).

The redaction half of /safe-analysis: where check_data_safety only *detects*
sensitive data and the read-hook *asks*, this returns a masked version so an
approved read shares no raw identifiers. Sensitive columns (patient/case IDs,
names, GPS, etc.) are pseudonymised consistently โ€” the same value always maps
to the same placeholder, so record linkage survives while identity does not.
PII patterns (emails, phones, IDs) are scrubbed from all remaining cells.

Local I/O only โ€” nothing leaves the machine except the masked preview you see.

Args:
    path:     Absolute local path to a CSV/TSV/text data file.
    max_rows: Rows to include in the masked preview (default 20).

Returns JSON: redacted preview rows, the columns masked, and a per-type count.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes
max_rowsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, description carries full burden. It discloses pseudonymisation, consistent mapping for record linkage, PII scrubbing, and local I/O. Could add error handling or file size limits, but current detail is strong.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with clear sections and bullet points. Some slight redundancy (e.g., 'masked preview' repeated), but overall efficiently communicates key points.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Output schema described (returns JSON with rows, masked columns, counts). Parameter semantics covered. Could mention file size limits or permissions, but given complexity, it's adequately complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage 0%, but description adds meaningful detail: 'path' is absolute local path to CSV/TSV/text, 'max_rows' has default 20. This goes well beyond the schema's bare type info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states verb 'Read' and resource 'sensitive data file', returning a 'REDACTED preview' with specific output. Distinguishes from sibling check_data_safety by contrasting 'detects' vs 'returns a masked version'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly positions tool as 'the redaction half of /safe-analysis' and explains when to use it versus check_data_safety and the read-hook. Also notes local-only operation for privacy.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

register_code_artifactMetis ยท Software Engineer โ€” Register Code ArtifactA

Save a script, snippet, reusable function or template to the Code Repository.

Use this whenever the user writes or shares code worth reusing, so it can be
found and rebuilt later. Capture as much reproducibility context as you can.

Args:
    title: Short descriptive name (e.g. "INLA BYM2 spatial model setup").
    code: The actual code.
    language: r | python | sql | stata | shell | โ€ฆ (lowercase).
    project_id: The project this belongs to (links it for reuse). Optional.
    kind: script | snippet | function | template.
    purpose: One line on what it does / when to use it.
    tags: Comma-separated tags (e.g. "spatial,INLA,mapping").
    file_path: Where the script lives on disk, if any.
    packages: Dependencies / environment (e.g. "INLA 24.9, sf, dplyr").
    params: Seeds, thresholds, hyperparameters used (for exact reproduction).
ParametersJSON Schema
NameRequiredDescriptionDefault
codeYes
kindNoscript
tagsNo
titleYes
paramsNo
purposeNo
languageNo
packagesNo
file_pathNo
project_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It mentions 'Capture as much reproducibility context as you can' but lacks information on side effects, permissions, rate limits, or what happens if the code already exists. This is insufficient for a save operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is front-loaded with the core action and usage guidance before listing parameters. Each sentence serves a purpose, though the parameter list is lengthy but necessary given the lack of schema descriptions.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the high parameter count (10) and zero schema description coverage, the description provides minimal coverage for each parameter. It does not explain default values, validation rules, or return value format (though an output schema exists). The description is adequate but leaves gaps for an agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, so the description must compensate. It lists each parameter with a brief semantic hint (e.g., 'Short descriptive name' for title, 'r | python | sql | ...' for language). While not exhaustive, it adds significant meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose with a specific verb ('Save') and resource ('Code Repository'). It enumerates the types of code artifacts (script, snippet, reusable function, template) and distinguishes itself from siblings like 'search_code_repository' which retrieves code.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides a clear usage context: 'Use this whenever the user writes or shares code worth reusing.' It does not, however, explicitly state when not to use the tool or mention alternatives, which would be helpful for agents deciding between this and other tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

register_data_dictionaryMetis ยท Software Engineer โ€” Register Data DictionaryA

Record a dataset's data dictionary โ€” one stored entry per variable.

Captures each variable's name, type, label, unique values / factor levels,
and units so future analysis scripts reuse the exact same names and
treatments. Re-registering the same dataset is idempotent: it replaces the
previous dictionary for that dataset (matched on dataset_name + project_id).

Args:
    dataset_name: Name of the dataset, e.g. "hat_cases_2015_2023".
    variables: List of variable entries. Each entry may be a plain string
        (the variable name) or an object with any of: name (required),
        type, label, unique_values, units, notes. Entries without a name
        are skipped.
    project_id: Project this dataset belongs to (default empty string);
        also part of the key used when replacing an existing dictionary.
    dataset_path: Where the dataset lives on disk (default empty string).

Returns:
    A confirmation message with the count of variables recorded for the
    dataset, or an error if none were provided.
ParametersJSON Schema
NameRequiredDescriptionDefault
variablesYes
project_idNo
dataset_nameYes
dataset_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so the description carries full burden. It discloses that the tool stores per-variable entries, is idempotent (matching on dataset_name+project_id), and returns a confirmation with count or an error. This provides sufficient behavioral insight for an agent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a brief paragraph explaining purpose and behavior, followed by a clear bulleted list of arguments. Every sentence adds value without repetition. No unnecessary elaboration.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has 4 parameters (2 required), no annotations, and an output schema (described as returning confirmation or error), the description is complete. It explains what the tool does, how each parameter works, and what to expect as output. No gaps remain.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description's 'Args' section adds detailed semantics for each parameter: dataset_name with example, variables with structure (strings or objects with optional fields like name, type, etc.), project_id and dataset_path with defaults and roles. This far exceeds the schema's minimal info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool records a data dictionary for a dataset, listing specific variable attributes (name, type, label, etc.). It distinguishes from sibling tools like 'register_code_artifact' or 'record_dataset_treatment' by focusing on variable metadata. The verb 'Record' is specific and actionable.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use it (to capture variable definitions for reproducibility) and notes idempotency (re-registering replaces). It doesn't explicitly state when not to use it or name alternatives, but the context is clear enough for an agent to infer appropriate use cases.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

reindex_memoryMetis ยท Memory Curator โ€” Reindex MemoryA

Re-embed memory entries that are missing vector indexes.

Scans each requested layer for rows without a corresponding vector in the
vec_* table, generates embeddings, and inserts them. Safe to run repeatedly
โ€” only processes gaps, never overwrites existing vectors.

Use this to recover from embedding failures, or after importing memories
via raw SQL. Can be scheduled nightly via APScheduler.

Args:
    layers: Comma-separated layers to reindex: 'episodic', 'semantic',
        'procedural' (default: all three).
    batch_size: How many entries to embed per batch (default 50).
        Lower values use less memory; higher values are faster.

Returns:
    Summary of how many entries were reindexed per layer.
ParametersJSON Schema
NameRequiredDescriptionDefault
layersNoepisodic,semantic,procedural
batch_sizeNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. States 'Safe to run repeatedly โ€” only processes gaps, never overwrites existing vectors.' Discloses non-destructive, idempotent behavior. Could add more on performance impact or locking, but sufficient for a recovery tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured: concise purpose, behavioral detail, usage scenarios, Args, Returns. No superfluous sentences. Each element earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given it's a maintenance tool with two parameters and an output schema, the description covers purpose, behavior, usage, parameters, and return value. Complete enough for an agent to decide and invoke correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description includes an Args section explaining both parameters: layers (comma-separated, defaults, valid values) and batch_size (memory vs speed trade-off). Adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Re-embed memory entries that are missing vector indexes.' It specifies the action (re-embed) and resource (memory entries). Distinguishes from siblings by focusing on missing vector indexes, and differs from tools like kg_index_memory or consolidate_old_memories.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit usage scenarios: 'Use this to recover from embedding failures, or after importing memories via raw SQL.' Also mentions it 'can be scheduled nightly via APScheduler.' Lacks explicit when-not-to-use or alternatives, but offers clear context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

reject_proposalMetis โ€” Reject ProposalA

Reject a pending skill improvement proposal without applying it.

The skill file is not changed. The proposal is marked rejected with an
optional reason.

Args:
    proposal_id: The numeric ID from get_pending_proposals()
    reason: Optional note explaining why the proposal was rejected
ParametersJSON Schema
NameRequiredDescriptionDefault
reasonNo
proposal_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must stand alone. It clearly states the behavior: the skill file is not changed, the proposal is marked rejected with an optional reason. This is sufficient for a simple non-destructive action.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, starting with the core purpose, then explaining effects, then listing parameters in a clear structure. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the core functionality and parameters, but given that an output schema exists (though not shown), it does not describe the return value or any confirmation message. For a simple action, this is adequate but could be more complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by explaining both parameters: proposal_id is 'the numeric ID from get_pending_proposals()' and reason is 'optional note explaining why the proposal was rejected', adding significant context beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('reject') and resource ('pending skill improvement proposal'), clearly distinguishing it from siblings like apply_proposal and approve_proposal by stating 'without applying it'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description indicates when to use the tool (to reject a pending proposal) and implies alternatives by contrasting with applying, but does not explicitly name sibling tools or provide when-not-to-use guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

rememberMetis ยท Memory Curator โ€” RememberA

Store something in memory with automatic classification and scope tagging.

The unified write interface to Metis's memory system. Classifies the content
into the appropriate memory layer and stores it with scope tags for later
retrieval via recall().

Memory types:
  - 'episodic': A time-stamped event (something that happened)
  - 'semantic': A distilled concept or definition (timeless knowledge)
  - 'procedural': A workflow or how-to pattern
  - 'note': A human-curated memory palace entry (saved to DB + markdown)
  - 'auto': Let Metis classify based on content (default)

Scope tags determine visibility:
  - scope='global': Visible to all agents and projects
  - scope='agent': Visible only when agent_id matches
  - scope='project': Visible only when project_id matches
  - scope='session': Visible only in this session

Args:
    content: The text to remember. Can be a finding, concept, workflow,
        decision, or any text worth preserving.
    memory_type: How to classify this memory. One of 'episodic', 'semantic',
        'procedural', 'note', or 'auto' (default โ€” Metis decides).
    agent_id: Tag this memory as belonging to a specific agent (e.g. 'librarian').
    project_id: Tag this memory as belonging to a specific project.
    scope: Visibility scope: 'global' (default), 'agent', 'project', or 'session'.
    title: Optional short title. Auto-generated from content if empty.
    tags: Comma-separated topic tags (e.g. 'hat,diagnostics,rdts').
    session_id: Current pipeline session ID (optional).

Returns:
    Confirmation of what was stored, in which layer, with what scope.
ParametersJSON Schema
NameRequiredDescriptionDefault
tagsNo
scopeNoglobal
titleNo
contentYes
agent_idNo
project_idNo
session_idNo
memory_typeNoauto

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It transparently explains that content is classified into layers, stored with scope tags, and returns a confirmation message. It covers auto-classification and default behaviors, but lacks details on potential side effects or authorization requirements.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with sections for memory types and scope tags, making it easy to scan. It is slightly verbose but every sentence adds value. The main purpose is front-loaded in the first sentence.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (8 parameters, no annotations, existing output schema), the description covers all necessary aspects: purpose, parameter details, memory classification, scope rules, and return value. It leaves no critical gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must fully document parameters. It explains all 8 parameters, including their types, defaults, and purposes. For example, it lists memory types with examples, scope options with visibility rules, and mentions auto-generated titles and comma-separated tags.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it stores content in memory with automatic classification and scope tagging. It uses specific verbs ('store', 'classify', 'tag') and distinguishes itself from retrieval tools like `recall()` by being 'the unified write interface to Metis's memory system'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear guidance on when to use this tool (to store memories) and implicitly distinguishes from alternatives like `recall()` for retrieval. It details memory types and scope tags, helping the agent choose appropriate parameters. However, it doesn't explicitly state when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

remove_first_run_markerMetis โ€” Remove First Run MarkerA

Delete the .first-run marker file to signal that the config wizard is complete.

Called at the end of the first-run wizard after all config files are written. Safe to call even if the marker does not exist.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description covers the key behavioral trait: it deletes a marker file and is idempotent. It does not mention side effects or auth requirements, but for a simple file deletion, this is sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is three concise sentences. It front-loads the action, then provides context and safety information. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple zero-parameter tool with an output schema (context indicates exists), the description provides complete context: purpose, timing, and safety. Minimal risk of misuse.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The tool has no parameters, so the schema already fully defines inputs. The description adds context about the action but does not need to elaborate on parameters. Baseline score of 4 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Delete', the resource '.first-run marker file', and the purpose 'to signal that the config wizard is complete'. It distinguishes itself from sibling tools, none of which are similar.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description specifies when to call it ('at the end of the first-run wizard after all config files are written') and notes idempotency ('Safe to call even if the marker does not exist'). It does not explicitly mention when not to use it, but the usage context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

remove_library_itemMetis ยท Librarian โ€” Remove Library ItemA

Remove a library item from the Metis index, optionally deleting the file.

De-indexes a paper or document by deleting its row from library_seeded. By
default the file on disk is left untouched (index-only removal); set
delete_file=True to also delete the file, which is guarded so only paths
inside the PKM root can be removed. To hide rather than remove an item, use
archive_library_item instead.

Args:
    relative_path: The relative_path primary key identifying the row in the
        library_seeded table.
    delete_file: If True, also delete the underlying file from disk (subject
        to the within-PKM-root safety check); if False (default), only the
        index row is removed.

Returns:
    A confirmation message of what was removed, or a not-found / error
    message if the item or table is missing.
ParametersJSON Schema
NameRequiredDescriptionDefault
delete_fileNo
relative_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavior: it deletes a row from library_seeded, default file left untouched, delete_file guarded to PKM root only, and returns confirmation or error. No hidden traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a short summary followed by detailed Args and Returns sections. Every sentence adds value without redundancy. It is appropriately sized for the tool's complexity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers return values (confirmation/error), behavior, safety mechanism, and alternative tool. Given the presence of an output schema (implied by return description), no gaps remain for a removal operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 0% parameter description coverage, but the description provides thorough explanations for both parameters: relative_path as primary key, delete_file with default and safety condition. This fully compensates for the schema gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it removes a library item from the Metis index with optional file deletion, and explicitly contrasts with archive_library_item for hiding. The verb 'remove' and resource 'library item' are specific and distinct from siblings.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use the alternative (archive_library_item instead of remove), and explains the two modes (index-only vs file deletion) with a safety guard. Provides clear guidance on setting delete_file.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

remove_projectMetis โ€” Remove ProjectA

Remove a project from Metis entirely.

Deletes project record and associated tasks from DB.
If delete_files=True, also deletes the external_path folder from disk
(only if path is within RC root โ€” safety check enforced).

Args:
    project_id: The project_id to remove.
    delete_files: If True, delete the project folder from disk. Default False.
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idYes
delete_filesNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Describes what gets deleted (record, tasks, optionally folder) and the safety check. No annotations provided, so burden is on description. Lacks disclosure of irreversibility, required permissions, or response format. Output schema exists but not detailed.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise with a clear structure: brief intro, bulleted effects, Args section. No wasted words or redundancy. Every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers key behavioral aspects (deletion scope, file safety check) and parameter details. Could add irreversibility warning or permission requirements, but output schema likely covers return structure. Effective given tool complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but description adds meaningful context for both parameters: project_id identifies the project, delete_files explains behavior and default value. Adds safety constraint for file path.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the tool removes a project entirely, deleting the project record and associated tasks, with an option to delete files. Distinguishes from siblings like archive_project and delete_task by specifying destructive action.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly describes when to use (permanent removal) and includes a safety check for file deletion. Does not explicitly state when not to use or compare to alternatives like archive_project, but the context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

remove_tracked_fileMetis โ€” Remove Tracked FileA

Stop tracking a file so Metis no longer watches it for changes.

Removes a single file from the tracked-files list (the files the dashboard
Planning tab scans for activity). Use this when a file is no longer relevant
or was added by mistake. The file on disk is never touched โ€” only its
tracking record is deleted. The inverse of add_tracked_file.

Args:
    path: Absolute path of the file to stop tracking. Must match the path
        exactly as it was registered.

Returns:
    A confirmation that tracking stopped, or a note if the path was not in
    the tracking list.
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavioral traits: the file on disk is never touched, only the tracking record is deleted. It also explains what the tracking record is for and what the return value will be, leaving no ambiguity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise at ~150 words, well-structured with a clear opening sentence, a paragraph on usage, and a bulleted Args/Returns section. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (single parameter, no annotations, referenced output schema), the description is fully sufficient. It covers purpose, usage, behavior, parameter details, and return value. No gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the description adds key semantics for the 'path' parameter: it must be an absolute path exactly as registered. This is essential information. Could also mention that it's the only parameter, but schema already indicates one required param.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'remove' (or 'stop tracking') and the resource 'tracked file', and distinguishes it from sibling 'add_tracked_file' by labeling it as the inverse. It also specifies the context of the tracked-files list in the Planning tab.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use ('file no longer relevant or added by mistake'), and implies when not to use (do not want to delete the file on disk). It also references the sibling 'add_tracked_file' as the opposite operation. Could mention 'scan_tracked_files' to find paths, but it's not essential.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

reset_thinking_profileMetis โ€” Reset Thinking ProfileA

Clear all thinking_profile_events and reset thinking-profile.yaml to defaults.

This erases all recorded preference signals and restores the default profile.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses destructive behavior ('erases all recorded preference signals') but could be more explicit about irreversibility or side effects. No annotations exist to shift the burden.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with action, no fluff. Every word is necessary and informative.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and no annotations, the description covers the essential effects. Could mention whether the action is reversible or if any confirmation is needed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters (0 params, baseline 4). The description adds context about what resources are affected (events and yaml), compensating for the absence of parameter info.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the action ('clear all thinking_profile_events and reset thinking-profile.yaml to defaults') and resource, distinguishing it from siblings like 'update_thinking_profile' or 'record_thinking_event'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implies usage for resetting to defaults but lacks explicit guidance on when to use vs. alternatives (e.g., 'update_thinking_profile') or any prerequisites.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

restore_dbMetis โ€” Restore DbA

Restore the Metis database from a backup.

Renames the current live database to <db>.pre-restore.<timestamp>
before overwriting, so you can recover if something goes wrong.

IMPORTANT: This overwrites the live database. All changes since the backup
was taken will be lost. The dashboard must be restarted after restore.

Args:
    backup_path: Full path to the .sqlite backup to restore from.
    confirm:     Must be the string 'YES' to proceed.

Returns JSON with status and paths.
ParametersJSON Schema
NameRequiredDescriptionDefault
confirmNo
backup_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description fully discloses behavior: it renames the current database, overwrites the live database, loses all changes since backup, and requires a restart after restore.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with sections for purpose, important warnings, and args. It is slightly verbose but front-loads critical information efficiently.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the destructive nature and existence of an output schema, the description adequately covers prerequisites, behavioral details, and post-action requirements, making it complete for an agent to use safely.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description adds crucial meaning: backup_path is described as a full path to .sqlite backup, and confirm must be the string 'YES' to proceed, which is not clear from the schema alone.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Restore the Metis database from a backup' with a specific verb and resource. It distinguishes itself from the sibling 'backup_db' by being the restore counterpart.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for restoring from a backup and warns about overwriting and restart, but does not explicitly guide when to use this tool versus alternatives like backup_db or list_backups.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

review_courseMetis ยท Course Builder โ€” Review CourseA

Step 6 โ€” Run quality checks on a drafted course before publishing.

Checks:
  - All lessons in lessons.json have a corresponding file on disk
  - Each lesson file contains the required section headers
  - No lessons are empty (< 200 chars)
  - lessons.json is valid JSON with modules and lessons arrays

Returns a pass/fail report. Fix any failures before calling publish_course().

Args:
    slug: The course slug to review.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, description lists checks performed but does not state side effects (read-only, no modifications), error conditions, or permissions needed. Adequate but not comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-organized with step number, purpose, bulleted checks, instruction, and parameter. No redundant sentences, all content earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Mentions return of pass/fail report, but with output schema present, description need not detail return structure. Lacks prerequisites and report interpretation details.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Single parameter 'slug' described as 'The course slug to review.' Schema coverage is 0%, so description adds basic meaning but not detailed syntax or examples.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Run quality checks on a drafted course before publishing' and lists specific checks, distinguishing it from sibling tools like publish_course.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly tells to fix failures before calling publish_course, implying usage timing. Does not mention alternatives or when not to use, but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

run_metisMetis โ€” Run MetisA

Master /metis entry point โ€” runs the 11-stage pipeline and returns a routing decision.

Every /metis invocation passes through here. The pipeline:
  1. Bootstraps or resumes the session
  2. Classifies content (PUBLIC/INTERNAL/CONFIDENTIAL/SENSITIVE)
  3. Data Guardian: blocks SENSITIVE requests outright
  4. Cybersecurity: blocks prompt injection and suspicious URLs
  5. Parses intent and selects the appropriate agent(s)
  6. Allocates model and token budget
  7. Assembles minimum surgical context from memory
  8. Persists the turn to session_events
  9. Returns routing decision โ€” agents execute and then call:
       save_session_event(..., 'result', output)
       log_agent_run(..., session_id=session_id)
       write_reflexion(session_id, agent_slug, ...)

Stages 10 (logging) and 11 (reflexion) are called by the executing agent
after completing their work.

Args:
    request: The researcher's request text.
    session_id: Existing session ID if resuming. Leave empty to auto-bootstrap.
    client: Which Claude client is calling ('code'|'chat'|'cowork'|'dashboard').
    max_turns: Maximum pipeline turns before graceful truncation (default 20).
ParametersJSON Schema
NameRequiredDescriptionDefault
clientNocode
requestYes
max_turnsNo
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It reveals key behaviors: content classification, blocking sensitive requests, persistence to session_events, and returning a routing decision. However, it omits details on error handling, idempotency, or side effects beyond the pipeline steps.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is verbose at over 250 words, including a detailed bullet list of the 11 pipeline stages. While well-structured and informative, it could be more concise by summarizing the pipeline without enumerating every step.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (4 params, output schema exists), the description covers the pipeline flow, parameter semantics, and subsequent agent actions. It lacks details on error scenarios or return format, but the output schema (not shown) likely handles return clarity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It provides an 'Args' section with brief but meaningful explanations for each of the 4 parameters (e.g., 'Existing session ID if resuming. Leave empty to auto-bootstrap.'). This adds value beyond the schema's type and name.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states it is the 'Master /metis entry point' that runs an 11-stage pipeline and returns a routing decision. This clearly distinguishes it from sibling tools like 'metis_doctor' or 'session_bootstrap' by defining its central orchestrating role.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description notes that 'Every /metis invocation passes through here' and details which stages are executed by the tool versus called by the agent later. This provides clear context for when to use it, though it does not explicitly list alternatives or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_brainstorm_outputMetis โ€” Save Brainstorm OutputA

Freeze a brainstorm session as a saved Markdown output.

Writes to outputs/brainstorms/<date>_<slug>.md and updates the
brainstorm_sessions table status to 'saved'.

Args:
    session_uuid: The session identifier.
    title:        Short descriptive title for the brainstorm.
    synthesis:    The key insights and connections (Markdown-formatted).
    action_items: Bullet-point action items or follow-up questions.
ParametersJSON Schema
NameRequiredDescriptionDefault
titleYes
synthesisYes
action_itemsNo
session_uuidYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Given no annotations, the description carries the burden of behavioral disclosure. It transparently states side effects: writes a file to 'outputs/brainstorms/' and updates the 'brainstorm_sessions' table status to 'saved'. This is good, though it could mention if the operation is idempotent or destructive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured. It front-loads the main action, then lists side effects, and finally documents parameters in a clear list. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 4 parameters and an output schema (not shown), the description adequately covers the tool's behavior, side effects, and parameter semantics. It does not explain return values, but the output schema likely covers that. The side effects (file write, table update) are explicitly stated.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description includes an Args section that adds brief descriptions for all four parameters (e.g., 'The session identifier', 'Short descriptive title'). These add meaning beyond the raw schema, though they are minimal. The baseline for low coverage is higher, so a 4 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: to save/freeze a brainstorm session as Markdown output. It specifies the action ('Freeze') and the resource ('brainstorm session'). While it distinguishes from siblings like 'brainstorm_turn' by focusing on final saving, it does not explicitly differentiate itself from other related tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No usage guidance is provided. The description does not indicate when to use this tool versus alternative tools (e.g., 'brainstorm_turn' for ongoing sessions, 'get_brainstorm_session' for retrieval). It lacks context on prerequisites or exclusion criteria.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_course_curriculumMetis ยท Course Builder โ€” Save Course CurriculumA

Step 4 โ€” Save the approved curriculum design for a course.

Call this after the Learning Architect has produced the curriculum.
Pass a JSON object with ``modules`` (array) and ``lessons`` (array).
Writes to `knowledge/courses/{slug}/course.json` and advances to Step 5.

Args:
    slug: The course slug.
    curriculum_json: JSON object with ``modules`` and ``lessons`` arrays.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes
curriculum_jsonYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries the burden. It discloses file write destination (`knowledge/courses/{slug}/course.json`) and state advancement (to Step 5). However, it omits side effects, error handling, permissions, or validation behavior. For a mutation tool with no annotations, this is adequate but not fully transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences plus argument list. Front-loaded with purpose and step. No redundant information. Every sentence serves a purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Output schema exists (though not shown) so return value documentation is not needed. Description explains the step context and file writing. Lacks details on error cases or input validation, but is sufficient for a simple 2-param tool within a larger workflow.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so description adds essential meaning: slug as course identifier, curriculum_json as JSON with modules and lessons arrays. This compensates for empty schema descriptions. Could be strengthened by detailing the structure of modules and lessons.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states verb 'Save' and resource 'approved curriculum design for a course'. Identifies as Step 4 in a workflow, distinguishing it from sibling tools like save_course_outline (earlier step) and save_course_sources (different content).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicit guidance: 'Call this after the Learning Architect has produced the curriculum.' Provides context on when to use, but lacks when-not-to-use or alternatives. Workflow context (Step 4) helps agents understand ordering.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_course_outlineMetis ยท Course Builder โ€” Save Course OutlineA

Save an approved course outline after Step 2 (Scope Plan).

Call this once the user has reviewed and approved the module outline.
Pass outline_json as a JSON array of module objects:
  [{"module": 1, "title": "...", "bloom_level": "...", "hours": 2}, ...]

Args:
    slug: The course slug returned by start_course_build()
    outline_json: JSON array of module definitions
    approved: Must be True to advance the build to Step 3 (Harvest)

Returns:
    Confirmation and next-step instructions.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes
approvedNo
outline_jsonYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full responsibility. It states the tool saves the outline and advances if approved is True. However, it does not explain side effects (e.g., overwriting), validation of input, or error conditions. The behavior is adequately described but lacks detail on edge cases.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with an initial sentence, then 'Args:' and 'Returns:' sections. It is concise overall, though the parameter details could be slightly trimmed without losing meaning.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the tool's purpose, parameters, and its place in a multi-step process. It mentions a return value ('Confirmation and next-step instructions'), but does not detail validation or error handling. Given the output schema exists, this is mostly complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds significant meaning to each parameter: slug is linked to start_course_build, outline_json format is exemplified with module structure, and approved is explained with its effect. Since schema descriptions are absent (0% coverage), this compensates fully.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Save' and the resource 'course outline'. It specifies the step context ('after Step 2 (Scope Plan)') and that it advances to Step 3. This distinguishes it from sibling tools like save_course_curriculum and save_course_sources.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly says to call the tool 'once the user has reviewed and approved the module outline' and that 'approved must be True to advance'. This provides clear context, but it does not mention when not to use it or alternative tools for earlier/later steps.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_course_sourcesMetis ยท Course Builder โ€” Save Course SourcesA

Step 3 โ€” Save harvested source metadata for a course.

Call this after the Content Harvester has collected materials. Pass a
JSON array of source objects. Each source is written as a YAML file in
`knowledge/courses/{slug}/sources/` and the build advances to Step 4.

Args:
    slug: The course slug.
    sources: JSON array of source dicts โ€” each must have at least a
             ``title`` and one of ``url``, ``file_path``, or ``doi``.
             Example: '[{"title": "OpenIntro Stats", "url": "https://openintro.org/book/os/", "type": "textbook"}]'
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes
sourcesYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses behavioral effects (writes YAML files, advances build) but does not cover error handling, idempotency, or prerequisite steps. Adequate but incomplete.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is concise with front-loaded purpose, clear structure, and no unnecessary words. Each sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 2 parameters, no annotations, and presence of output schema, description explains input format, effect, and pipeline position. Lacks error scenarios but is otherwise complete for a simple save tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so description adds meaning: explains slug as course slug and sources as JSON array with required fields and an example. Significantly compensates for schema's lack of descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description states 'Step 3 โ€” Save harvested source metadata for a course' with a specific verb and resource, and clearly distinguishes from sibling tools like save_course_curriculum and save_course_outline.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states 'Call this after the Content Harvester has collected materials', providing a clear precondition, and mentions that the build advances to Step 4, indicating sequence. Does not explicitly say when not to use, but the pipeline context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_daily_briefMetis ยท News Radar โ€” Save Daily BriefA

Save a composed daily brief so the dashboard widget shows it.

This is the write-back half of the daily-brief round-trip. Claude Desktop (or
Claude Code) composes the brief from generate_daily_insight() context, then
calls this to upsert the finished prose into the daily_insights table โ€” the
same table the dashboard's morning-brief widget reads via get_daily_insight().
Desktop and the dashboard share one database, so no files are involved: once
saved, the brief appears in the dashboard on next load.

Args:
    content: The finished daily-brief prose (markdown ok). Required.
    sources: Comma-separated list of what the brief drew on (optional).
    date: YYYY-MM-DD; empty = today.
    model: Model identifier that composed it, for provenance (optional).

Returns:
    Confirmation with the date saved and a pointer to the dashboard widget.
ParametersJSON Schema
NameRequiredDescriptionDefault
dateNo
modelNodesktop-brief
contentYes
sourcesNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It explicitly states this is a write operation (upsert), mentions that it affects the dashboard widget on next load, and notes that desktop and dashboard share a database. No contradictions with annotations since none exist.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear top-level purpose, followed by contextual detail, and then a labeled Args section. It is concise but includes essential details. Minor improvement could be made by slightly tightening the prose, but overall it's effective and earns its length.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (4 parameters, no annotations, but an output schema described in the Returns note), the description covers all necessary aspects: purpose, usage flow, parameter meanings, and return value. It references sibling tools (generate_daily_insight, get_daily_insight) and explains the shared database context, making it complete for agent decision-making.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description includes an Args section that adds meaning to all 4 parameters: content is 'finished daily-brief prose', sources is 'comma-separated list', date is 'YYYY-MM-DD', model is 'for provenance'. The schema itself has no descriptions (coverage 0%), so the description fully compensates and provides clear semantics.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it saves a composed daily brief to the dashboard widget. It distinguishes itself as the write-back half of the daily-brief round-trip, contrasting with generate_daily_insight() and get_daily_insight(). The verb 'save' combined with the resource 'daily brief' is specific and unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It explains that this tool is used after composing the brief from generate_daily_insight() context, and that it upserts into the same table the dashboard reads. This provides clear when-to-use guidance. However, it does not explicitly state when not to use it or list alternative tools beyond the sibling get_daily_insight.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_lesson_draftMetis ยท Course Builder โ€” Save Lesson DraftA

Step 5 of the course build โ€” save one drafted lesson to disk.

Writes a single lesson's markdown into the course's lessons folder; call it
once per lesson during drafting. The content is validated and rejected
unless it contains all required sections, in order:
## Learning objectives, ## Prerequisites, ## Content (with ### Section N:
subsections), ## Summary, ## Exercises, ## Further reading. The filename is
derived from the lesson number and its title in lessons.json.

Args:
    slug: The course slug; selects the
        knowledge/courses/<slug>/lessons/ folder to write into.
    lesson_id: The lesson id, which must match an id in lessons.json
        (e.g. "lesson-01"); used to look up the title and build the filename.
    content: The full markdown body of the lesson, including all required
        sections listed above.

Returns:
    A confirmation with the written file path, or a rejection message
    listing the required sections that are missing.
ParametersJSON Schema
NameRequiredDescriptionDefault
slugYes
contentYes
lesson_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, but description details validation requirements (required sections in order), filename derivation, and return types (confirmation or rejection). Does not mention overwrite behavior or permissions, but adequately covers key behaviors.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is front-loaded with purpose and context, then validation rules, then parameters. Every sentence adds value; no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simple function (save a lesson draft), the description covers purpose, usage, validation, and return values. An output schema exists, so return explanation is sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% (no descriptions in input schema), but the description includes a full Args section explaining each parameter's purpose and usage, fully compensating for the gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states 'Step 5 of the course build โ€” save one drafted lesson to disk', specifying verb (save), resource (drafted lesson), and context, distinguishing it from sibling tools like save_course_curriculum or publish_course.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'call it once per lesson during drafting', providing clear context and expected frequency. Does not explicitly exclude alternatives, but sibling tools are distinct operations.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_reviewMetis โ€” Save ReviewA

Save an agent's output as a review file and record the run.

This is the standard way a Metis agent persists its work: it writes the
markdown to outputs/reviews/{agent_slug}/{date}_{task_slug}.md and, by
default, logs the run so the dashboard's Agents tab tracks it. Use it at the
end of any substantive agent task so the result is filed and discoverable.

Args:
    agent_slug: Slug of the agent that produced the review
        (e.g. "epidemiologist", "writing-partner").
    task_slug: Short kebab-case slug identifying the task; becomes part of
        the filename (e.g. "article1-methodology").
    content: The full review content as markdown.
    log_run: Whether to also record this as an agent run for the dashboard.
        Defaults to True.

Returns:
    A confirmation with the path of the saved review file.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
log_runNo
task_slugYes
agent_slugYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses file writing to specific path, default logging behavior, and confirmation return. With no annotations, this adequately informs about side effects and outcomes.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-organized with paragraphs then structured Args and Returns. Front-loaded with purpose, every sentence adds value, concise without missing key information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

All 4 parameters documented, output described, tool behavior fully explained. No gaps given the presence of output schema and sibling context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Description includes Args section with clear explanations for each parameter, including examples (e.g., 'epidemiologist') and default behavior for log_run, fully compensating for zero schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states 'Save an agent's output as a review file and record the run.' Specific verb and resource, with context of standard persistence method, distinguishing it from siblings.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says 'Use it at the end of any substantive agent task so the result is filed and discoverable.' Provides clear context but does not name specific alternatives or exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_session_eventMetis โ€” Save Session EventA

Stage 8: Persist one atomic event to session_events (write-through guarantee).

Call this after every tool call, file write, and classification decision.
Event types: 'turn' | 'tool_call' | 'result' | 'file_write' | 'redline' | 'classification'

Args:
    session_id: Session ID from session_bootstrap().
    event_type: Category of event being recorded.
    content: Event content (truncated to 2000 chars).
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
event_typeYes
session_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description must disclose behavioral traits. It mentions 'write-through guarantee' and 'content (truncated to 2000 chars)', adding useful context. However, it does not describe success/failure behavior, idempotency, or what happens on duplicate events.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a one-line purpose, followed by usage guidance, event types, and parameter explanations. Every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the output schema exists (not shown), the description provides adequate context for a simple logging tool: when to use, what to provide, and truncation. It could mention error handling or return value, but the output schema likely covers that.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It explains each parameter: session_id comes from session_bootstrap(), event_type is a category, and content is truncated. It also enumerates valid event types. While it lacks format constraints, it adds substantial meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Persist one atomic event to session_events (write-through guarantee)'. It provides a specific verb and resource, and distinguishes itself from siblings by specifying it is for atomic event persistence and should be called after every tool call, file write, and classification decision.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use the tool: 'Call this after every tool call, file write, and classification decision.' This provides clear context, but it does not mention when not to use it or offer alternatives among sibling tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

save_session_summaryMetis ยท Memory Curator โ€” Save Session SummaryA

Save a summary of the current session to persistent memory.

Call this at the end of any substantive session so future sessions can
recall what was discussed, decided, or built โ€” the core of Metis's
cross-session continuity. The saved summary is searchable later via
search_session_memory and surfaces when you resume related work.

Args:
    summary: A 2โ€“5 sentence, plain-English summary of what happened this
        session. Required.
    key_topics: Optional list of short topic tags for retrieval
        (e.g. ["phase-10", "APScheduler"]).
    decisions: Optional list of key decisions made
        (e.g. ["switched to AGPL-3.0"]).
    session_id: Optional identifier used to group related summaries; if
        omitted, the summary is stored on its own.

Returns:
    A dict with the saved record's id and a confirmation status.
ParametersJSON Schema
NameRequiredDescriptionDefault
summaryYes
decisionsNo
key_topicsNo
session_idNo

TDQS

A4.5/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description should disclose behavior. It states 'save to persistent memory' and mentions return value, but lacks details on mutation effects (e.g., does it overwrite existing summaries?), permissions needed, or error handling. The description provides basic transparency but could be more comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: one paragraph for purpose, then bullet lists for arguments and return value. Every sentence adds value, no fluff. Front-loaded with the primary purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple save operation with 4 parameters (1 required) and no output schema, the description covers purpose, parameters, return format, and usage timing. It could be more complete by describing behavior on duplicate session_id or storage limits, but overall it's adequate.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description is the sole source for parameter documentation. It explains each parameter's purpose, required status, format (2-5 sentences for summary, list of tags for key_topics, etc.), and optional nature. This adds significant value beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: saving a session summary to persistent memory for cross-session continuity. It uses specific verbs ('Save a summary') and directly distinguishes itself from sibling tool 'search_session_memory' (retrieval vs. storage).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use the tool: 'Call this at the end of any substantive session.' It also mentions future retrieval via search_session_memory, providing clear context for usage without describing when not to use it in detail.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scaffold_scriptMetis ยท Software Engineer โ€” Scaffold ScriptA

Assemble the raw material to write a NEW script from previous work.

Pulls the most relevant prior code, the project's dataset variables/paths,
and the cleaning steps โ€” so you can write a new script in the user's own
conventions (same names, paths, packages). Call this, then write the script.

Args:
    goal: What the new script should do.
    project_id: The project to scaffold for (prioritised, then cross-project).
    language: Target language (r, python, โ€ฆ).
ParametersJSON Schema
NameRequiredDescriptionDefault
goalYes
languageNor
project_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.6/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description details that the tool pulls prior code, variables, paths, and cleaning steps, and does not indicate any destructive actions. Though no annotations are provided, it conveys a readโ€‘only assembly behavior. It could be more explicit about nonโ€‘mutability, but overall it is transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with two short paragraphs and a bulletโ€‘style argument list. It frontโ€‘loads the core purpose and provides all essential information without extraneous text. Every sentence is purposeful.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's straightforward purpose (scaffolding a new script), the description adequately covers what it does, what inputs are needed, and how to use it in sequence. An output schema exists, so full detail on return values is not required.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema lacks descriptions (0% coverage), but the tool's description meaningfully defines all three parameters: goal, project_id, and language, explaining their purpose and defaults (e.g., language default 'r'). This adds significant value beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it 'Assemble the raw material to write a NEW script from previous work,' specifying the verb and resource. It distinguishes from sibling tools like 'analyze_script' by focusing on creating new scripts rather than analyzing existing ones.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises 'Call this, then write the script,' providing a clear sequence of use. It also explains the scope of project_id (prioritised then cross-project). However, it does not explicitly state when not to use this tool or mention alternatives, which would be beneficial.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_folder_for_intentMetis โ€” Scan Folder For IntentA

Detect a project's purpose from its folder contents.

Args:
    folder_path: Absolute path to the project folder.
    scan_type: One of:
        "names"   โ€” file/folder names only (fast, no content read)
        "content" โ€” reads README, CLAUDE.md, PLANNING.md (more accurate)
        "none"    โ€” skip scan, return empty (user will describe manually)
ParametersJSON Schema
NameRequiredDescriptionDefault
scan_typeNonames
folder_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must disclose behavior fully. It reveals that 'names' skips content reading, 'content' reads specific files, and 'none' returns empty. But it omits details on error handling, permissions, or side effects, which is acceptable but not exhaustive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with a one-sentence summary followed by a structured Args section. It is front-loaded with purpose. The Args list is slightly verbose but necessary for clarity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the low complexity and presence of an output schema, the description covers the essential inputs and behaviors. It lacks edge-case handling (e.g., missing folder) but is sufficient for the intended simple use case.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, yet the description fully explains both parameters: folder_path as absolute path, and scan_type with three enumerated values and their behaviors. This adds substantial meaning beyond the schema's minimal titles.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the purpose: 'Detect a project's purpose from its folder contents.' It uses a specific verb (detect) and resource (project purpose from folder), and distinguishes from siblings like 'scan_project_folder' by focusing on intent detection.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains the three scan_type options with their use cases (fast vs accurate vs manual), providing clear context for when to choose each. However, it does not explicitly compare to alternatives like 'detect_projects' or state when not to use the tool, leaving some ambiguity.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_inboxMetis ยท News Radar โ€” Scan InboxA

Scan the inbox/ folder and auto-transcribe any audio files to ideas.

Detects audio files (.m4a, .mp3, .wav, .ogg, .flac, .aac) and, when
auto_transcribe_audio=True (default), transcribes each one with faster-whisper
and captures the transcript as an idea. The audio file is moved to
inbox/processed/ after successful transcription.

Non-audio files are listed but left for manual review.

Args:
    auto_transcribe_audio: When True (default), automatically transcribe
        audio files found in the inbox. Set to False to just list them.
ParametersJSON Schema
NameRequiredDescriptionDefault
auto_transcribe_audioNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full responsibility. It discloses file movement to processed/, transcription method (faster-whisper), and handling of non-audio files (listed for manual review). It does not cover error handling or permissions, but covers key behavioral traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is moderately concise, listing supported audio formats, processing steps, and parameter usage. It is well-structured with bullet-like lines and a clear separation of parameter description. Could be slightly shorter but still efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, no required fields, output schema exists), the description is largely complete. It explains input, process, and output (ideas). Missing details about return format are covered by the output schema, so overall adequate.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description adds full value. It explains the single parameter 'auto_transcribe_audio' in detail: default behavior (True) and effect when set to False (list only). This compensates completely for the schema lack.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states a specific action ('scan the inbox/ folder and auto-transcribe any audio files to ideas'), identifying the resource (inbox) and the operation (transcribe). It includes supported audio formats and distinguishes itself from sibling tools like scan_literature, scan_news, etc., by focusing on inbox processing.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains what the tool does and when to use the parameter (auto-transcribe), but does not explicitly say when to avoid this tool or suggest alternatives among siblings. It provides context but lacks exclusionary guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_literatureMetis ยท News Radar โ€” Scan LiteratureA

Scan inputs/literature/ for new PDFs and register them in literature_metadata.

Walks all subdirectories. Uses the parent folder name as a domain tag.
Deduplicates by title so running multiple times is safe.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden. It discloses key behaviors: recursive directory walk, domain tagging, title-based deduplication. However, it doesn't specify what happens to duplicates (skip? overwrite?) or mention any authorization needs.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three concise, front-loaded sentences. Every sentence adds value: purpose, behavior details, and safety guarantee. No redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a zero-parameter tool with an output schema, the description covers main points (location, action, safety, dedup). Could mention supported file types beyond PDFs or behavior on existing entries, but it's largely complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has no parameters, so the baseline is 4. The description adds operational context (subdirectory walk, tagging) that compensates for the lack of parameters.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb ('scan') and resource ('inputs/literature/ for new PDFs') and action ('register them in literature_metadata'). It clearly distinguishes from sibling tools like 'scan_folder_for_intent' or 'scan_news' by specifying the target directory and file type.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains that it walks all subdirectories, uses parent folder as domain tag, and deduplicates by title, making re-runs safe. While it doesn't explicitly contrast with alternatives, the context is clear enough to guide appropriate use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_newsMetis ยท News Radar โ€” Scan NewsA

Fetch RSS feeds and add new items to news_briefs.

Checks WHO outbreak news, CDC EID journal, PLOS NTDs, and Anthropic news.
Deduplicates by URL so running multiple times is safe.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.5/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description provides one behavioral insight: deduplication by URL makes repeated runs safe. However, it omits details like authentication requirements, failure handling, or whether it appends or overwrites existing items.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Three sentences, 57 words, front-loaded with the core action. Each sentence serves a purpose: main action, sources, and safety behavior.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and presence of output schema, the description is largely complete. It explains the action, sources, and idempotency. The only minor gap is lack of detail on output structure, but the output schema likely covers that.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Zero parameters, so baseline is 4. The description adds no parameter-specific info but explains the tool's purpose effectively, which compensates for the lack of parameters.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('Fetch RSS feeds and add new items to news_briefs') and lists specific sources, but does not explicitly differentiate from sibling tools like 'get_news_briefs' or other scanning tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives such as 'scan_literature' or 'scan_pubmed_alerts'. The description only covers functionality, not usage context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_openalexMetis ยท Librarian โ€” Scan OpenalexA

Scan OpenAlex for recent papers matching a query.

OpenAlex covers 474M papers including preprints. Free API, no key required.
Results are inserted into news_briefs with source_type='article'.

Args:
    query: Free-text search query. Defaults to the query in user-preferences.json
           (openalex_query field), then to your configured research topics from
           user-config.yaml, then to a generic global-health fallback.
    days_back: How many days back to search (default: 1).
    max_results: Maximum papers to retrieve (default: 10).
ParametersJSON Schema
NameRequiredDescriptionDefault
queryNo
days_backNo
max_resultsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It discloses that results are inserted into news_briefs with source_type='article' and that the API is free and keyless. However, it does not cover rate limits, response format, error behavior, or what happens if max_results is exceeded. The fallback chain is helpful but behavioral aspects are partially covered.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences plus a bulleted Args section. Every element adds value: the opening sentence states purpose, the second adds key context (coverage, API, side effect), and the Args map cleanly to the schema. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has no required parameters and an output schema exists, the description sufficiently covers the tool's purpose, behavior, parameter semantics, and side effects (insertion into news_briefs). The fallback chain ensures the agent understands default behavior even without explicit user input. This is complete for a data-gathering tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It does so thoroughly: each parameter is explained with defaults and fallback logic for query, days_back, and max_results. The query parameter's fallback chain adds crucial context beyond the schema's type/default.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the action ('Scan OpenAlex for recent papers matching a query'), specifies the resource (OpenAlex), and clearly distinguishes it from sibling tools like search_semantic_scholar or search_literature. The verb 'scan' combined with 'recent papers' and 'query' leaves no ambiguity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides useful context on query defaults and the free API, but does not explicitly state when to use this tool over alternatives (e.g., search_literature, search_semantic_scholar). No when-not-to-use or exclusion criteria are given, so the agent must infer from the OpenAlex-specific scope.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_outgoingMetis ยท Data Guardian โ€” Scan OutgoingA

Output rail: check a drafted response for leaked PII before it's sent.

The output-side complement to the read-side hook. Agents call this on any
response that might contain individual-level data; it enforces the
constitution's no-pii-output rule. Returns a verdict, what was found, and a
masked version safe to send.

Args:
    text: The drafted response text to check.

Returns JSON: {safe: bool, found: {type: count}, masked: str}.
ParametersJSON Schema
NameRequiredDescriptionDefault
textYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description explains the action (checking for PII) and the return values (verdict, found, masked), but does not explicitly state whether the tool is read-only or if it has side effects. Given no annotations are provided, more explicit disclosure about safety traits would be beneficial, but the description still conveys core behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (6-7 sentences), well-structured with a title, explanation, and a returns section. Every sentence adds value, and the purpose is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with a single input and a documented output schema (returning JSON with safe, found, masked), the description explains the output structure inline. It is complete and covers all necessary aspects for agent invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The only parameter, 'text', is clearly described in the description: 'The drafted response text to check.' This adds meaning beyond the schema, which only provides type and title. Since schema description coverage is 0%, the description fully compensates.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's function: 'check a drafted response for leaked PII before it's sent.' It uses specific verbs and nouns ('check', 'drafted response', 'PII'), and distinguishes itself from sibling tools like 'check_data_safety' or 'scan_inbox' by emphasizing the output rail and complementing the read-side hook.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly instructs agents to call this on 'any response that might contain individual-level data' and mentions it enforces the constitution's rule. While it does not explicitly state when not to use or list alternatives, the context is clear and sufficient for deciding when to invoke.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_project_folderMetis โ€” Scan Project FolderA

Scan a project folder to detect work done since last scan.

Checks: git commits, modified files, todo completions, new documents.
Updates the project's scan_summary and last_scanned fields.
Also refreshes CLAUDE.md in the project folder.
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description discloses key behavioral traits: it updates scan_summary and last_scanned fields, and refreshes CLAUDE.md. This gives the agent awareness of side effects beyond the simple operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with four lines, each providing distinct information. It is front-loaded with the main action and efficient, though slightly more structure could improve clarity.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description adequately covers the tool's purpose and side effects. It does not mention prerequisites (e.g., project must be connected) but is otherwise complete for a simple one-parameter tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% and the description does not elaborate on the project_id parameter beyond its name. While the parameter is straightforward, the description adds no additional meaning or constraints.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool scans a project folder to detect work done since last scan, listing specific checks (git commits, modified files, todo completions, new documents). This distinguishes it from siblings like 'scan_project_scripts' and 'full_scan'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Usage is implied through the description of what it does, but there is no explicit guidance on when to use this tool versus alternatives (e.g., scan_project_scripts) or any conditions/limitations.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_project_scriptsMetis ยท Software Engineer โ€” Scan Project ScriptsA

Walk all R/Python scripts in a folder, extract metadata, and register them.

For each script found (.R, .Rmd, .qmd, .py):
- Parses packages, file reads/writes, variables, and transforms
- Auto-registers each as a code_artifact in the Code Repository
- Aggregates variables across all scripts
- Maps detected file paths to dataset names

Returns a summary: N scripts, M packages, K datasets, P variables.

Args:
    folder_path: Absolute path to the folder to scan.
    project_id:  Project ID to associate the scripts with (optional).
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idNo
folder_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It details the scanning, parsing, and registration behavior, and notes the return summary. It does not mention potential side effects like overwriting or permissions, but overall adequately describes the tool's actions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a header, bullet points, and an Args list. It is moderately concise, about 8 lines, with no superfluous content, though it could be slightly more compact.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (scanning multiple script types, registering artifacts, aggregating data) and the presence of an output schema (not shown but indicated), the description covers the key inputs and outputs. It explains the return summary (N scripts, M packages, etc.), making it sufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the tool description includes an 'Args' section explaining both parameters (folder_path and project_id). This adds meaning beyond the schema titles, compensating for the lack of schema-level descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool walks R/Python scripts, extracts metadata, and registers them as code artifacts. It lists specific file types and processing steps, but does not explicitly differentiate from sibling tools like scan_project_folder or scan_folder_for_intent.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description describes what the tool does but does not specify when to use it versus alternatives, nor does it mention when not to use it. Usage context is implied but not explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_pubmed_alertsMetis ยท Librarian โ€” Scan Pubmed AlertsA

Scan PubMed for recent papers matching a query.

Uses NCBI E-utilities (free, no API key required). Results are inserted
into news_briefs with source_type='article'. Safe to call daily from the
morning scan scheduler job.

Args:
    query: PubMed search query. Defaults to the query in user-preferences.json
           (pubmed_query field), then to your configured research field from
           user-config.yaml, then to a generic global-health fallback.
    reldate: Look back this many days (default: 1 = yesterday + today).
    max_results: Maximum papers to retrieve (default: 15).
ParametersJSON Schema
NameRequiredDescriptionDefault
queryNo
reldateNo
max_resultsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description discloses the free API, no key needed, daily safety, and insertion to news_briefs. However, lacks details on rate limits, error handling, or idempotency. Given no annotations, more transparency would be beneficial.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear opening statement, technical detail, usage context, and parameter explanations. It is reasonably concise for the information provided.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With an output schema available, the description covers purpose, parameters, use context, and behavior. It lacks return value description but the output schema likely fills that gap. Idempotency and error handling are omitted, but for a daily scan tool this may be sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description thoroughly explains each parameter: query's multi-source fallback, reldate's meaning and default, max_results' purpose. This provides substantial value beyond the minimal schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool scans PubMed for recent papers matching a query. It mentions daily scheduling and response insertion, but does not explicitly contrast with sibling tools like scan_literature or search_literature, though the PubMed specificity is implied.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description mentions daily scheduling context and safety, but does not provide when-not-to-use or alternative tools for more complex queries or different sources.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

scan_tracked_filesMetis โ€” Scan Tracked FilesA

Scan all tracked files and report which have changed since last scan.

Reads tracked_files table, checks actual file modification times,
and updates last_scanned timestamps.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description carries full burden and discloses that it reads a table, checks file modification times, and updates timestamps. It clearly describes the operations performed, which is sufficient for a mutation tool.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise with two sentences, front-loading the key purpose. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a zero-parameter tool, the description is fairly complete, explaining the process and purpose. The presence of an output schema reduces the need to detail return values. Minor gap: no mention of error cases or output format.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

There are no parameters, so schema coverage is 100% trivially. The description adds no parameter-specific meaning, but the baseline for zero parameters is 4.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool scans tracked files and reports changes since last scan, with details on how it works. It distinguishes itself from siblings like add_tracked_file or full_scan by focusing on scanning only tracked files for modifications.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for checking changes in tracked files but lacks explicit guidance on when to use this tool versus alternatives like full_scan or scan_inbox. No exclusions or context are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_code_repositoryMetis ยท Software Engineer โ€” Search Code RepositoryA

Search the Code Repository for prior code, variables and treatments.

Finds reusable scripts/functions, dataset variables and cleaning steps that
match a query โ€” e.g. "Poisson model offset" or "catastrophic expenditure".

Args:
    query: What you're looking for.
    project_id: Restrict to one project. Optional.
    language: Restrict to a language (r, python, โ€ฆ). Optional.
ParametersJSON Schema
NameRequiredDescriptionDefault
queryYes
languageNo
project_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.6/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose all behavioral traits. It only describes the search action and does not mention any side effects, rate limits, pagination, or limitations. The read-only nature is implied but not confirmed.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and front-loaded with the main purpose. The separate 'Args' section for parameters is well-structured. Every sentence contributes meaning, though the examples could be slightly more integrated.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the basic functionality and parameter semantics. Since an output schema is present, the lack of return value explanation is acceptable. However, it does not address edge cases like empty results or multiple matches, leaving some gaps for a simple search tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the 'Args' section in the description adds meaningful descriptions for all three parameters (e.g., 'What you're looking for.' for query). These add value beyond the schema's titles and types.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches the Code Repository for code, variables, and treatments, with concrete examples ('Poisson model offset'). It distinguishes from sibling search tools by specifying the unique resource (Code Repository).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage through its purpose and examples but does not explicitly state when to use this tool over alternatives like search_fulltext or search_literature. No when-not or exclusion criteria are provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_fulltextMetis ยท Librarian โ€” Search FulltextA

Full-text keyword search across all indexed PDFs.

Exact KEYWORD search across the full body text of your indexed PDFs. For
meaning-based (semantic/vector) PDF search use search_pdf_knowledge; for
reference metadata only use search_library.

Searches the library_fulltext table for papers containing your keywords.
More powerful than title/abstract search โ€” finds methodological details
in the body of papers.

Args:
    query: Keywords to search for, space-separated (words shorter than three
        letters and common stop-words are ignored).
    max_results: Maximum number of results to return (default 10).

Returns:
    A single TextContent listing each matching paper's title (or filename)
    with a highlighted snippet around the first matched keyword, or a
    "no results" / "no usable keywords" message.
ParametersJSON Schema
NameRequiredDescriptionDefault
queryYes
max_resultsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, description carries full burden. Describes search scope (library_fulltext table), stop-word handling, and return format (snippet with title/filename). Lacks detail on user scoping or performance, but covers key behavioral aspects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise yet complete: uses clear sections, front-loads purpose, and includes Args list. No redundant sentences.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given two simple parameters and no output schema provided, the description covers purpose, usage, parameters, and return format comprehensively. Output schema is described in text.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but description fully documents both parameters: query (space-separated, with stop-word filtering) and max_results (default 10). Adds meaning far beyond raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it performs full-text keyword search across all indexed PDFs, with verb (search), resource (full text), and scope (all PDFs). Explicitly distinguishes from siblings by naming alternatives for semantic search and metadata-only search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit guidance on when to use this tool (exact keyword search) versus alternatives (search_pdf_knowledge for semantic search, search_library for metadata). Mentions it is more powerful than title/abstract search, aiding correct selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_libraryMetis ยท Librarian โ€” Search LibraryA

Search the local literature library for matching papers.

Searches your saved reference METADATA (title/authors/abstract/tags of papers
in your Zotero-synced + manual library). For meaning-based search inside PDF
body text use search_pdf_knowledge; for exact keyword search of PDF text use
search_fulltext; for an online/external literature lookup use search_literature.

Runs a substring search across the user's indexed references (Zotero-synced
plus manually added) so you can find what they already have before going to
the internet. Matches the query against title, authors, abstract, and tags,
returning the newest papers first. For richer literature workflows see
ask_library, search_literature, and export_citations.

Args:
    query: Search terms matched as a substring against title, authors,
        abstract, and tags.
    limit: Maximum number of papers to return, ordered newest year first
        (default 10).

Returns:
    A formatted text list of matching papers (title, authors, year, journal,
    DOI, abstract snippet), or a "no papers found" message.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
queryYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses that it runs a substring search across indexed references, matches against title/authors/abstract/tags, returns newest first, and returns a formatted list or no-papers message. This is good behavioral context, though it doesn't explicitly state it is read-only or mention any side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured: a concise first sentence, a paragraph explaining scope and alternatives, another on behavior, then clearly labeled Args and Returns sections. Every sentence adds value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no annotations, the description covers purpose, usage guidelines, parameters, and return format. It mentions output schema implicitly by describing the return. Minor details like case sensitivity or pagination are missing, but overall it is quite complete for a search tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, but the description compensates fully. It explains 'query' as substring search against title/authors/abstract/tags and 'limit' as max number of papers, ordered newest first, with a default of 10. This adds significant meaning beyond the schema's type and required constraints.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool searches the local literature library for matching papers, specifying the resource (local literature library) and the action (search). It distinguishes from siblings by mentioning alternatives for PDF body text search and online lookup, which helps the agent differentiate.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly provides when to use: searches saved reference metadata before going to the internet, and for different types of searches (PDF body, exact keyword, online) it directs to specific sibling tools. This provides clear context and exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_literatureMetis ยท Librarian โ€” Search LiteratureA

Search the user's literature database.

Searches your curated/seeded literature catalogue by structured facets
(disease, method, geography, keyword). For your Zotero/manual reference
metadata use search_library; for full PDF body text use search_fulltext;
for semantic RAG over indexed PDFs use search_pdf_knowledge.

Searches the library_seeded SQLite table. Use this to find papers
by disease focus, methodology, geography, or any keyword.

Args:
    query: Search term, matched as a case-insensitive substring.
    field: Column to search -- one of "all", "disease", "method",
        "geography", or "article".
    limit: Maximum number of results to return (default 20).

Returns:
    A single TextContent holding a markdown table of matching rows from the
    library_seeded table, or an error/"no results" message if the database,
    table, or column is missing or nothing matches.
ParametersJSON Schema
NameRequiredDescriptionDefault
fieldNoall
limitNo
queryYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A5/5.0
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description fully carries the burden. Discloses it searches a specific SQLite table, uses case-insensitive substring matching, returns markdown table or error message on missing data. No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Structured with purpose, sibling alternatives, details, args, returns. Every sentence adds value. Front-loaded with core purpose. No redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no annotations and high sibling count, description sufficiently covers purpose, parameters, behavior, return format, and error handling. Output schema exists, and description complements it by describing the table format.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but description explains each parameter: query as case-insensitive substring, field with allowed values (all, disease, method, geography, article), limit with default 20. Adds complete meaning beyond bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clear verb 'search' plus specific resource 'curated/seeded literature catalogue' and explicit facets (disease, method, geography, keyword). Distinguishes from three sibling tools by naming them and their use cases.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use sibling tools (search_library, search_fulltext, search_pdf_knowledge) for different content, and when to use this tool for structured facets. Provides clear context for agent decision.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_literature_extendedMetis ยท Librarian โ€” Search Literature ExtendedB

Search literature with optional inclusion of archived items.

Searches library_seeded table across basename, relevance_note, disease,
geography, method fields. By default excludes archived items.

Args:
    query: Search term.
    include_archived: Include items with status='archived'. Default False.
    limit: Max results. Default 20.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
queryYes
include_archivedNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden for behavioral disclosure. It does not explicitly state that the tool is read-only, nor does it mention side effects, authentication needs, or rate limits. The focus is on parameter behavior rather than operational traits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and uses a structured list for arguments, making it easy to parse. However, the initial sentence could be more front-loaded with the tool's primary function before diving into details.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description appropriately focuses on input behavior and search scope. It covers defaults, field targets, and the archive toggle, which is adequate for a search tool of moderate complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description provides clear, meaningful explanations for all three parameters (query, include_archived, limit), adding value since the input schema has 0% coverage. Default values and meanings are well articulated.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches literature across specific fields (basename, disease, etc.) and allows inclusion of archived items. However, it does not explicitly distinguish from its likely sibling search_literature, leaving the 'extended' aspect somewhat inferred.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description mentions default exclusion of archived items and the include_archived parameter, providing basic usage context. But it offers no guidance on when to prefer this tool over alternatives like search_literature or when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_memoryMetis ยท Memory Curator โ€” Search MemoryA

Search the memory palace by keyword.

Looks across Metis's long-term memory to recall past context โ€” what was
decided, found, or noted before. It searches the memory_entries table
(title, summary, topics) and also greps journal/**/*.md files on disk, so
both structured memory and freeform journal notes are covered.

Args:
    query: Keyword or phrase to match against entry titles, summaries,
        topics, and journal note text.
    entry_type: Optional filter limiting results to one kind of entry โ€”
        "session", "journal", "idea", "decision", or "topic". Empty string
        (default) searches all types.

Returns:
    A text block of matching memory entries and journal hits, or a message
    when nothing matches.
ParametersJSON Schema
NameRequiredDescriptionDefault
queryYes
entry_typeNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations exist, so the description must fully disclose behavior. It describes search sources and return format but lacks details on idempotency, permissions, or side effects. As a read-only search, it is acceptable but not explicit about safety.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with clear sections (Args, Returns). It is concise while providing necessary details, though it could be slightly tighter.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has 2 non-enum parameters and an output schema, the description adequately explains the search sources, fields covered, and return format. No critical gaps for a simple search tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has no descriptions (0% coverage). The description adds meaning: query is a keyword or phrase, entry_type lists possible values (session, journal, idea, decision, topic) and default behavior. This compensates well for the schema gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches memory by keyword across both structured entries and journal notes, with explicit scope (memory_entries table and journal files). This is specific and distinct from sibling tools like search_session_memory or search_library.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains what data is searched and mentions optional filtering by entry type. However, it does not explicitly contrast with other search tools or provide when-not-to-use guidance, though the scope is clear enough for basic usage.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_notesMetis โ€” Search NotesA

Search markdown notes across domains, projects, and library.

Case-insensitive substring search with surrounding context lines.

Args:
    query: Search term.
    scope: Where to search -- "all", "domains", "projects", "library".
    limit: Maximum results (default 15).
    max_chars_per_result: Truncate each result's context to this many characters (default 500).
                          Pass 0 for no truncation.
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
queryYes
scopeNoall
max_chars_per_resultNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Given no annotations, the description discloses that it performs case-insensitive substring search with context lines and result truncation. However, it does not specify read-only nature, side effects, or permissions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with a one-line summary followed by structured parameter descriptions. No unnecessary words, and the information is efficiently front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With an output schema present and moderate complexity, the description covers core functionality well. Minor gaps: does not specify if search is on content or filename, nor the full return structure (handled by output schema).

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema coverage, the description provides clear explanations for all four parameters: query, scope, limit, and max_chars_per_result (including special behavior for 0). Adds value beyond the schema's types and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it searches markdown notes across specific scopes (domains, projects, library). It distinguishes from many sibling search tools by specifying 'markdown notes' and the supported scopes.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus alternatives like search_library or search_memory. Lacks context about when to choose this tool over similar ones.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_pdf_knowledgeMetis ยท Librarian โ€” Search Pdf KnowledgeA

Semantic search across one or more knowledge database layers.

Meaning-based (vector) search over your knowledge-base PDF chunks โ€” the RAG
retrieval tool behind grounded, cited answers. For exact keyword matches use
search_fulltext; for reference metadata use search_library; for your own
notes/memory (not documents) use semantic_search.

Searches indexed PDF chunks using 768-dim nomic-embed vector similarity.
You can search a single layer or combine layers (e.g. PH background + HAT specialist).

Args:
    query: Natural language question or keyword phrase to embed and match.
    databases: List of database slugs to search; pass None (the default) to
        search all indexed databases. Examples: ['ph-background'],
        ['hat-specialist', 'epi-methods'].
    top_k: Number of results to return (default 8).

Returns:
    A single TextContent listing the top-ranked PDF chunks (title, similarity
    score, layer, domain, page, source file, and an excerpt), or a message if
    nothing is indexed yet or no chunks match the requested databases.
ParametersJSON Schema
NameRequiredDescriptionDefault
queryYes
top_kNo
databasesNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden. It explains the vector search method (768-dim nomic-embed), result structure (title, score, layer, etc.), and behavior for no matches. It could mention that it only searches indexed PDF chunks, but the mention of 'nothing is indexed yet' implies this. Overall transparent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise yet thorough, with clear sections: purpose, sibling comparison, technical detail, args, and returns. It uses about 10 sentences with no unnecessary words, front-loading the most critical information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's moderate complexity (3 parameters, no nested objects) and the output schema existing (described as TextContent with detailed result format), the description is complete. It covers input semantics, behavioral constraints, return values, and usage context. No gaps evident.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds significant meaning beyond the input schema's type/default info. It provides natural language explanations for each parameter (query, databases, top_k), includes examples for databases, and clarifies the role of query as 'natural language question or keyword phrase.' This compensates for the 0% schema description coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Semantic search across one or more knowledge database layers.' It identifies the specific verb (search) and resource (PDF knowledge), and distinguishes from siblings by specifying when to use alternatives like search_fulltext, search_library, and semantic_search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides explicit guidance on when to use this tool and when to use alternatives: 'For exact keyword matches use search_fulltext; for reference metadata use search_library; for your own notes/memory (not documents) use semantic_search.' This helps the agent choose correctly.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_semantic_scholarMetis ยท Librarian โ€” Search Semantic ScholarA

Search Semantic Scholar for papers on a topic (citation-graph discovery).

Complements PubMed (scan_pubmed_alerts) and OpenAlex (scan_openalex) with
Semantic Scholar's 200M+ paper graph and citation counts. Free public Graph
API, no key required. Matched papers are inserted into news_briefs with
source_type='article' (domain 'Semantic Scholar') so the Librarian and the
dashboard surface them like any other discovered paper.

Args:
    query: Free-text topic to search (e.g. "HAT elimination surveillance").
           Defaults to your configured PubMed/topic query if empty.
    max_results: Maximum papers to retrieve (default 10, max 100).
ParametersJSON Schema
NameRequiredDescriptionDefault
queryNo
max_resultsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.5/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden. It discloses a key side effect: matched papers are inserted into news_briefs with specific metadata. It also mentions the API is free and no key required. However, it doesn't mention rate limits, error handling, or the exact response format beyond the output schema existence.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a concise intro, a contextual paragraph, and a clean Args list. Every sentence adds value without repetition. No fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (not shown but indicated), the description sufficiently covers the tool's purpose, behavior, and parameter details. It could be improved by briefly noting the return type or pagination behavior, but for a search tool with output schema, it is nearly complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It fully explains both parameters: query with an example and default behavior, max_results with default and maximum. This adds essential meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool performs citation-graph discovery on Semantic Scholar, using a specific verb ('Search') and resource ('Semantic Scholar'). It distinguishes itself from siblings by explicitly naming complementary tools (scan_pubmed_alerts, scan_openalex) and highlighting the unique value of 200M+ papers and citation counts.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear context for when to use this tool: for citation-graph discovery and complements PubMed/OpenAlex. It mentions no API key required, but does not explicitly state when not to use it or provide strict exclusions. The guidance is strong but lacks explicit when-not-to-use instructions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

search_session_memoryMetis ยท Memory Curator โ€” Search Session MemoryA

Search past session summaries for a topic or keyword.

Use this to recall what was discussed in previous sessions โ€” e.g.
"what did we decide about the installer?" or "when did we build APScheduler?".

Args:
    query: Keyword or phrase to search for.
    limit: Maximum number of results to return (default 10).
ParametersJSON Schema
NameRequiredDescriptionDefault
limitNo
queryYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.9/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must convey behavioral traits. It implies a read-only search but does not explicitly state non-destructive behavior, authorization needs, or side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, front-loads the purpose, and includes helpful examples. The argument list is clear. Minor redundancy could be removed.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple search tool with an output schema, the description covers purpose, usage, and parameters adequately. It does not detail pagination or result format, but these are likely in the output schema.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema coverage, the description adds value by explaining each parameter: query is a keyword/phrase, limit is max results with default 10. This compensates well for the schema's lack of descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Search past session summaries for a topic or keyword', using a specific verb and resource. It distinguishes from siblings like search_memory or recall by focusing on session summaries, though explicit differentiation is not given.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear context with examples ('what did we decide about the installer?') indicating when to use this tool. However, it does not explicitly exclude alternatives or state when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

session_bootstrapMetis โ€” Session BootstrapA

Stage 1: Find or create a session for the current computer.

Checks for an active session (same computer, last active within 2 hours).
If found: resumes it and returns the last 5 events.
If not: creates a new session and seeds context from recent memory.

Args:
    client: Which Claude client is calling ('code'|'chat'|'cowork'|'dashboard').
ParametersJSON Schema
NameRequiredDescriptionDefault
clientNocode

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description takes full responsibility for behavioral disclosure. It explains the conditional logic (check for active session, resume or create), the return of last 5 events or seeding from memory, and the required client parameter. It does not mention side effects like database writes or error handling, but the disclosed behavior is sufficient for most use cases.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, using a clear header and bullet-like structure. Every sentence adds value: purpose, conditional logic, and parameter. No wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (not shown but indicated), the description need not detail return values, but it still mentions returning last 5 events or seeding context. It covers the core behavior well, though it could mention error scenarios or prerequisites like a valid computer identifier.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The only parameter 'client' has a default in the schema but no description or enum. The description adds explicit allowed values ('code', 'chat', 'cowork', 'dashboard'), which is critical for correct invocation. This significantly adds meaning beyond the schema, especially with 0% schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose as 'Find or create a session for the current computer.' It uses a specific verb ('find or create') and resource ('session'), and distinguishes itself among siblings by being the only bootstrap tool. The detailed conditional logic (resume vs create) adds further clarity.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage as a first step ('Stage 1') but does not explicitly state when to use or not use this tool, nor does it compare to alternatives. While the context suggests it's a prerequisite, the lack of explicit usage guidance lowers the score.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

set_backup_scheduleMetis โ€” Set Backup ScheduleA

Configure the nightly backup schedule.

The schedule is read by the scheduler (Phase 10) to trigger backup_db()
automatically. This tool only persists the configuration.

Args:
    enabled:     Whether automatic nightly backups are on.
    time_utc:    Time in HH:MM UTC to run the backup (e.g. '02:00').
    keep_days:   How many days of backups to retain (older ones deleted).
    destination: Backup directory (defaults to metis/system/backups/).
ParametersJSON Schema
NameRequiredDescriptionDefault
enabledNo
time_utcNo02:00
keep_daysNo
destinationNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It discloses that the tool only persists configuration and that older backups will be deleted based on keep_days when the scheduler runs. However, it does not mention authorization needed, error states, or reversibility of settings.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured with a clear opening clause, a brief behavioral note, and a parameter list. Every sentence serves a purpose, and the most important information is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the tool's purpose and all parameters well. However, it does not mention the presence of an output schema or what the tool returns (e.g., a confirmation or the schedule state). Slightly incomplete for a tool with an output schema, but otherwise comprehensive.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage, so the description must compensate. It adds meaningful explanations for all 4 parameters: enabled (on/off), time_utc (format hint 'HH:MM'), keep_days (retention policy), and destination (default path). This adds significant value beyond the schema's bare types and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Configure the nightly backup schedule' with specific verb and resource. It further explains that the schedule triggers backup_db() automatically and that this tool only persists the configuration, distinguishing itself from related tools like backup_db and get_backup_schedule.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage context by stating the scheduler reads the schedule to trigger backup_db(), and that the tool only persists config. However, it does not explicitly state when to use this tool vs alternatives like backup_db for immediate backup or get_backup_schedule for viewing, nor does it provide when-not-to-use guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

set_discovery_tipsMetis โ€” Set Discovery TipsB

Adjust the feature-tips preference (the user's control).

Args:
    enabled:     True/False to turn tips on/off entirely.
    power_user:  True = expert mode (tips stay quiet); False = guided mode.
    snooze_days: >0 to snooze ALL tips for N days ("remind me later").
ParametersJSON Schema
NameRequiredDescriptionDefault
enabledNo
power_userNo
snooze_daysNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.4/5.0
Behavior1/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It only states 'adjust the feature-tips preference' without describing persistence, side effects, or response behavior. Agent has no insight into what happens after execution.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise: a single line for purpose followed by three lines for parameters. Front-loaded with purpose. No unnecessary words; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple preferences tool, parameter descriptions are adequate. However, lacks information about output format or return value (output schema exists but unused), and whether changes take effect immediately or require confirmation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so description is the sole source of parameter meaning. It adds clear, actionable explanations for each parameter: enabled (turn on/off), power_user (expert vs guided mode), snooze_days (snooze for N days). Significantly enhances understanding beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it adjusts the feature-tips preference, using a specific verb ('adjust') and resource ('feature-tips preference'). This distinguishes it from sibling tools like 'next_discovery_tip' (shows tip) and 'discovery_status' (gets status).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus alternatives. Does not mention prerequisites, exclusions, or when not to use it. Agents must infer usage from the purpose alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

set_network_policyMetis ยท Data Guardian โ€” Set Network PolicyA

Set the current network access policy for all agents.

'strict'  โ€” No internet access. Only local DB, files, and MCP tools.
'normal'  โ€” Default. Librarian and News Radar may access allowed domains.
'offline' โ€” Airplane mode. All external requests blocked.

Args:
    policy: One of 'strict' | 'normal' | 'offline'.
ParametersJSON Schema
NameRequiredDescriptionDefault
policyYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It explains the effect of each policy mode (strict, normal, offline) and that it applies to all agents, but does not mention requirements, reversibility, or potential disruptions (e.g., dropping connections).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise, using a brief sentence followed by a bullet list and explicit args. No unnecessary words or redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple one-parameter setter with an output schema, the description covers the core functionality well. It could mention return behavior or confirmation, but the output schema likely covers that. Missing failure conditions or required permissions.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must compensate. It defines the only parameter 'policy' with three valid values and their meanings, which adds significant value beyond the empty schema. However, it could have listed the values as an explicit enum.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it 'Set the current network access policy for all agents' and distinguishes three modes with explicit explanations. This differentiates it from the sibling 'get_network_policy' tool.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains what each policy does but does not provide when to use this tool versus alternatives. There is no mention of prerequisites, side effects, or guidance on when to choose which policy. However, the context is clear regarding the tool's function.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

set_project_categoryMetis โ€” Set Project CategoryA

Assign or change a project's category.

Sets the grouping label on a project so it sorts with related work on the
dashboard. Call get_project_categories first to reuse an existing label
rather than creating a near-duplicate.

Args:
    project_id: The project_id of the project to update.
    category: The category label to assign (e.g. "Article", "Grant");
        surrounding whitespace is trimmed.

Returns:
    A confirmation message naming the category and project that were set.
ParametersJSON Schema
NameRequiredDescriptionDefault
categoryYes
project_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It mentions whitespace trimming and return confirmation but lacks detail on permissions, reversibility, or side effects. Adequate for a simple update.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Compact and front-loaded: a short summary sentence, usage guidance, and a clean args/returns section. Every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity, the description covers purpose, desired preconditions, parameter details, and return value. The dashboard sorting effect adds useful context. Output schema presence reduces need to explain return format.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so description compensates well. Both parameters are described with examples for category (e.g., 'Article') and indication that whitespace is trimmed. Provides meaningful context beyond field names.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states 'Assign or change a project's category' using a clear verb-resource pair. It distinguishes from siblings like get_project_categories by calling that tool as a preliminary step.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit guidance to call get_project_categories first to reuse existing labels, and explains the dashboard sorting effect. Does not include when-not-to-use scenarios but context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

set_working_memoryMetis ยท Memory Curator โ€” Set Working MemoryA

Write a key/value pair to the current session's working memory.

Working memory is an ephemeral scratchpad โ€” it persists for the session
but is not indexed for vector search. Use it for state that agents need
mid-pipeline (e.g. intermediate results, decisions made so far).

Args:
    session_id: Pipeline session ID from session_bootstrap().
    key: Variable name (e.g. 'current_article', 'user_intent').
    value: Value to store (any string, JSON, or text).
ParametersJSON Schema
NameRequiredDescriptionDefault
keyYes
valueYes
session_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses key behavioral traits: ephemeral, session-only persistence, no vector search indexing. Since no annotations exist, the description fully covers behavior. Could mention whether existing keys are overwritten or the value scope size limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with a concise paragraph followed by bulleted arguments. No redundant sentences. Could be slightly more concise by removing 'any string, JSON, or text' redundancy, but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers the tool's purpose, usage context, and parameter meanings. With an output schema present, return values need not be explained. Lacks usage examples or edge cases, but sufficient for a simple write operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 0% description coverage, so the description compensates by explaining each parameter: session_id as pipeline session ID, key as variable name with examples, value as any string/JSON/text. Adds meaning beyond schema titles.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool writes a key/value pair to working memory, specifying the action ('write') and resource ('working memory'). It distinguishes from sibling tools like 'get_working_memory' and 'remember' by emphasizing ephemeral, session-scoped storage not indexed for search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly says to use for state needed mid-pipeline (intermediate results, decisions). Contrasts with vector search, implying when not to use (for persistent or searchable data). Provides clear context but could state exclusions more directly.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

start_course_buildMetis ยท Course Builder โ€” Start Course BuildA

Start a new course build pipeline.

Creates a course record in the course_builds table, adds a placeholder
row to learning_courses (status='building'), and returns the intake
questionnaire for the user to complete.

Args:
    topic: The subject or title of the course (e.g. "Multilevel models for epidemiologists")
    target_audience: Who this course is for (e.g. "MPH students with basic R knowledge")
    duration_hours: Estimated total course length in hours (0 = TBD)
    notes: Any initial notes or constraints the user has mentioned

Returns:
    Course ID, a brief confirmation, and the intake questionnaire.
ParametersJSON Schema
NameRequiredDescriptionDefault
notesNo
topicYes
duration_hoursNo
target_audienceNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It lists actions (creates, adds, returns) but does not disclose authorization needs, side effects, or whether the operation is reversible. Basic transparency is present but not comprehensive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (under 100 words), front-loaded with the main purpose, and organized with clear sections for args and returns. Every sentence adds value with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (4 parameters, output schema exists), the description fully explains the effect on the database and the return value (Course ID, confirmation, questionnaire). No critical information is missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, meaning the JSON schema provides no descriptions. The description compensates by giving clear explanations for each parameter (e.g., topic: 'The subject or title of the course'). This adds significant meaning beyond the schema's titles and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it starts a new course build pipeline, creates a course record, adds a placeholder row, and returns an intake questionnaire. It distinguishes from sibling tools like publish_course or save_course_curriculum by focusing on the initial pipeline step.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies this tool is for starting a course build, but it does not explicitly state when to use it versus alternatives like save_course_curriculum or publish_course. No guidance on prerequisites or context is provided.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

start_spanMetis โ€” Start SpanA

Open a new tracing span. Returns the span_id to pass to end_span().

Args:
    name:       Human-readable span label (e.g. 'stage_1_bootstrap', 'tool:search_library').
    kind:       Span type โ€” 'internal' | 'tool' | 'agent' | 'llm'. Default: 'internal'.
    session_id: Session identifier (from session_bootstrap). Optional.
    run_id:     FK to agent_runs.run_id. Optional.
    parent_id:  Parent span_id for nested spans. Optional.
    tags:       JSON string of extra key/value metadata. Optional.

Returns the span_id string โ€” pass it to end_span() when the work is done.
ParametersJSON Schema
NameRequiredDescriptionDefault
kindNointernal
nameYes
tagsNo
run_idNo
parent_idNo
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description adequately discloses that the tool creates a span and returns an identifier. It notes the need to call end_span, which is a key behavioral trait. Could mention potential side effects (e.g., memory/performance) but the simplicity of the operation makes this sufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear opening sentence followed by a bullet-style Args list and a Returns line. It is somewhat verbose given the tool's simplicity, but every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema (which likely defines the span_id return type), the description covers all necessary context: purpose, parameter details, return value, and the required follow-up call (end_span). It is complete for an AI agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description fully compensates by explaining each parameter's meaning, defaults, and examples (e.g., 'name: Human-readable span label... kind: Span type...'). This adds significant value beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb ('Open a new tracing span') and the resource ('span'), and distinguishes it from sibling tools like 'end_span' and 'get_spans' by focusing on creation and returning a span_id.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies a usage flow (pass span_id to end_span) but does not explicitly state when to use this tool versus alternatives, nor does it provide conditions, prerequisites, or exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

store_episodic_memoryMetis ยท Memory Curator โ€” Store Episodic MemoryA

Store an event in episodic memory and index it for vector search.

Logs a time-stamped EVENT (something that happened) and indexes it for vector
search. For a distilled, timeless concept/definition use store_semantic_memory;
for a human-curated palace note use add_memory_entry.

Episodic memory is a chronological log of things that happened โ€” ideas,
notes, papers read, tasks completed, agent runs.

Args:
    content: The text content of the event to remember.
    event_type: One of 'idea', 'note', 'task', 'paper', 'meeting', or
        'agent_run'.
    session_id: Current pipeline session ID (optional).
    metadata: JSON string with extra fields such as title, tags, or source.

Returns:
    A single TextContent confirming the stored event (its row id and type),
    or an error message if the database is missing, fastembed is not
    installed, or the write fails.
ParametersJSON Schema
NameRequiredDescriptionDefault
contentYes
metadataNo{}
event_typeNonote
session_idNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

The description discloses that the tool logs a time-stamped event, indexes it for vector search, and returns a TextContent with row id and type, or errors for missing dependencies or write failures. While it covers key behaviors, it could be more explicit about side effects (e.g., that it is a write operation). No annotation contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a brief intro, usage guidance, parameter descriptions, and return value. Every sentence contributes value without redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (4 parameters, 1 required) and presence of an output schema, the description fully covers purpose, usage, parameters, return value, and error conditions. It is complete and self-contained.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description adds significant meaning by explaining each parameter: content (text), event_type (enumerates options), session_id (optional), metadata (JSON with extras). It adds value beyond the schema, though it does not explicitly mention that content is required or the default values for event_type and session_id.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the tool stores an event in episodic memory and indexes it for vector search. It distinguishes itself from siblings like store_semantic_memory and add_memory_entry, and provides concrete examples of event types, making the purpose clear and specific.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description includes explicit guidance on when to use this tool versus alternatives: 'For a distilled, timeless concept/definition use store_semantic_memory; for a human-curated palace note use add_memory_entry.' It also clarifies that episodic memory is a chronological log, helping agents decide appropriate use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

store_procedural_memoryMetis ยท Memory Curator โ€” Store Procedural MemoryB

Store a successful workflow pattern in procedural memory.

Procedural memory captures 'how to do things' โ€” repeatable processes,
workflows that worked well, or step-by-step patterns for recurring tasks.

Args:
    procedure_name: Short name for this procedure (e.g. 'Domain literature search').
    steps: Markdown-formatted steps for the procedure.
    trigger_context: What situation should trigger using this procedure.
ParametersJSON Schema
NameRequiredDescriptionDefault
stepsYes
procedure_nameYes
trigger_contextNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description must carry the full burden of behavioral disclosure. It explains the parameters but does not disclose potential side effects (e.g., overwrite behavior, idempotency, auth requirements). For a write operation, this is insufficient.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise with minimal redundancy. It front-loads the purpose and uses a clear args list. No unnecessary sentences, though structuring could be slightly improved.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

The description covers the basics for a store operation, but lacks details on output (though output schema exists), error behavior, and constraints like uniqueness. It is adequate but not comprehensive.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description compensates well. It adds examples, specifies Markdown format for steps, and clarifies the trigger context purpose. This adds significant meaning beyond the raw schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool stores a successful workflow pattern in procedural memory and explains what procedural memory means. However, it does not explicitly differentiate from sibling tools store_episodic_memory or store_semantic_memory, which could cause confusion.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use (for repeatable processes, workflows that worked well) but lacks explicit guidance on when not to use or how it differs from alternative memory stores. No contrast with siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

store_semantic_memoryMetis ยท Memory Curator โ€” Store Semantic MemoryA

Store a distilled knowledge node in semantic memory.

Stores a distilled CONCEPT/definition (timeless 'what I know'). For a
time-stamped event use store_episodic_memory; for a human-curated palace
note use add_memory_entry.

Semantic memory holds the 'what I know' layer โ€” concepts, definitions,
and their relationships. Used by retrieval to surface relevant knowledge
without relying on raw event history.

Args:
    concept: Short name for the concept, e.g. 'RDT sensitivity' or
        'fAChE inhibition'.
    definition: A one-to-three-sentence definition or explanation.
    related_concepts: Comma-separated names of related concepts.
    source_type: Where this came from: 'paper', 'note', 'idea', or
        'user_defined'.
    source_id: ID of the source record, e.g. a paper DOI or idea_id.

Returns:
    A single TextContent confirming the stored node (its row id and concept
    name), or an error message if the database is missing, fastembed is not
    installed, or the write fails.
ParametersJSON Schema
NameRequiredDescriptionDefault
conceptYes
source_idNo
definitionYes
source_typeNouser_defined
related_conceptsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description covers the behavior well: it stores a concept, is part of semantic memory, and mentions error conditions (missing database, missing fastembed, write failure). However, it does not explicitly state whether the operation is idempotent or if it overwrites existing entries, and lacks details on side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a clear intro, usage guidance, parameter list, and return info. It is slightly verbose but still efficient. Every sentence adds value, though some repetition could be trimmed (e.g., 'what I know' is stated twice).

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 5 parameters (2 required), no nested objects, and an output schema (mentioned), the description covers all essential aspects: purpose, usage context, parameters, and return values. It is complete for an AI agent to correctly select and invoke the tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description provides detailed parameter explanations including examples for concept, definition, related_concepts, source_type (with enumerated values), and source_id. This fully compensates for the missing schema descriptions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it stores a 'distilled knowledge node in semantic memory' for timeless concepts, and explicitly contrasts with store_episodic_memory and add_memory_entry, making the purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use this tool (for storing concepts/definitions) and when not to (use store_episodic_memory for time-stamped events, add_memory_entry for curated notes). It also explains the role of semantic memory in retrieval.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

suggest_cleaningMetis ยท Data Analyst โ€” Suggest CleaningA

Profile a dataset and return specific recommended cleaning operations.

Analyses the profile and suggests operations with rationale, e.g.:
  - "col 'age' has 12% nulls โ†’ consider fill_na or drop_na_rows"
  - "7 duplicate rows detected โ†’ apply drop_duplicates"
  - "col 'name ' has leading/trailing whitespace โ†’ apply strip_whitespace"

Args:
    path: Absolute local path to the dataset file.

Returns JSON with profile summary and a list of suggested operations,
each with: operation, column (if applicable), rationale, priority (high/medium/low).
ParametersJSON Schema
NameRequiredDescriptionDefault
pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Describes the return format and operational logic (analyzes profile, suggests operations with priorities), but omits whether the tool modifies the dataset (assumed read-only but not stated). No annotations to supplement.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Concise, front-loaded purpose, examples illustrate functionality, and structured Args/Returns section clearly explains output format. No redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers purpose, parameters, and return structure adequately. Output schema covers return details, so description doesn't need to exhaustively list fields. Slight gap in describing the profile summary format.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Single 'path' parameter is described as 'Absolute local path to the dataset file,' adding necessary detail beyond the schema's type definition. Compensates for 0% schema coverage.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states the tool profiles a dataset and returns recommended cleaning operations, with concrete examples distinguishing it from simpler profiling or cleaning execution tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives like profile_dataset or clean_dataset. Lacks prerequisites (e.g., file must exist) or context about typical workflow placement.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

surface_relevant_contextMetis ยท Memory Curator โ€” Surface Relevant ContextA

Retrieve past memory entries relevant to a topic and return a structured context brief.

Searches memory_entries by topic keyword and optional tag list, ranks by
relevance, and formats the top N entries for injection into the current
agent's working context.

Args:
    topic: The topic or task description to search for.
    tags: Optional comma-separated topic tags to include (e.g. 'methods,phd').
    top_n: Maximum number of entries to return (default 5).
ParametersJSON Schema
NameRequiredDescriptionDefault
tagsNo
top_nNo
topicYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries full burden. It describes search, ranking, and formatting behavior, but does not disclose permissions, side effects, or data safety. It implies a read-only operation but doesn't confirm.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise (three sentences plus arg definitions), front-loaded with purpose, and every sentence adds value. No fluff or repetition.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a retrieval tool with an output schema, the description adequately covers purpose, parameters, and usage. It could mention behavior when no entries are found, but overall complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The description adds meaning beyond the input schema: it explains 'topic' as 'topic or task description', 'tags' as 'optional comma-separated topic tags' with an example, and 'top_n' as 'maximum number of entries to return (default 5)'. Schema coverage is 0%, so description compensates well.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it retrieves past memory entries by topic and returns a structured context brief. It specifies the verb 'Retrieve' and the resource 'memory entries', but does not explicitly differentiate from sibling tools like search_memory or search_notes.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use (when needing memory entries for context injection) and how the tool works (topic keyword, optional tags, ranking, top N). However, it lacks guidance on when not to use or mention of alternatives among the many sibling search tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

sync_zotero_libraryMetis ยท Librarian โ€” Sync Zotero LibraryA

Sync the Zotero library into Metis literature_metadata.

Performs an incremental sync by default โ€” only fetches items changed since
the last sync. Pass full=True to re-sync everything.

Requires ZOTERO_API_KEY and ZOTERO_USER_ID in metis/system/.env.

Args:
    full: If True, re-sync all items regardless of last sync state.
ParametersJSON Schema
NameRequiredDescriptionDefault
fullNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must carry burden. It describes sync behavior (incremental vs full) and environment requirements, but does not disclose potential side effects (e.g., overwrites, destructive actions) or rate limits. Adds value but incomplete.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is concise, front-loaded with purpose, then details. Every sentence is informative with no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, no nested objects, output schema exists), the description covers sync behavior, parameter usage, and prerequisites. Lacks error handling details but adequate for the complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by explaining the 'full' parameter's effect (re-sync all items). Single parameter is clearly described, adding meaning beyond the schema's type and default.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool syncs Zotero library into Metis literature_metadata, with a specific verb 'sync' and resource, and distinguishes between incremental and full sync modes.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides clear usage guidance on the default incremental sync and how to trigger full sync with the 'full' parameter, plus mentions required environment variables. Lacks explicit differentiation from sibling tools like sync_zotero_local.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

sync_zotero_localMetis ยท Librarian โ€” Sync Zotero LocalA

Import a local Zotero library by reading zotero.sqlite directly (no API key).

The offline alternative to sync_zotero_library: reads your local Zotero
database file, so it works with no ZOTERO_API_KEY and no network. Items are
imported into literature_metadata (library_source='zotero-local'), the same
table the Librarian and search_library use.

Args:
    db_path: Path to zotero.sqlite. If empty, Metis searches common locations
             (~/Zotero/zotero.sqlite, and /mnt/c/Users/*/Zotero on WSL).
ParametersJSON Schema
NameRequiredDescriptionDefault
db_pathNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavior. It notes that the tool reads the database directly (no modifications stated) and imports into literature_metadata with library_source='zotero-local'. However, it does not mention whether imports are appended or deduplicated, nor error handling or side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is brief (three sentences) and front-loaded with the core action. It includes a separate 'Args' section for parameter details, making it easy to scan.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given a single parameter and the presence of an output schema (not shown), the description covers the essential: purpose, alternative, parameter behavior, and target table. It could mention overwrite vs. append, but overall it is complete enough.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage with only type and default. The description compensates by explaining db_path meaning and fallback behavior when empty, adding significant value beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool imports a local Zotero library by reading zotero.sqlite directly, with no API key or network needed. It explicitly distinguishes the tool from its sibling sync_zotero_library by calling it 'the offline alternative'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explains when to use this tool (no network, no API key) and contrasts it with sync_zotero_library. It also details the db_path parameter and the fallback search behavior. It lacks an explicit 'when NOT to use' but the context is implied.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

toggle_contextMetis โ€” Toggle ContextB

Activate or deactivate a specialist context.

Args:
    name: Context name to toggle (must exist in specialist_contexts).
    active: True to activate, False to deactivate.
ParametersJSON Schema
NameRequiredDescriptionDefault
nameYes
activeYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.3/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry full behavioral disclosure. It mentions that 'name must exist in specialist_contexts' but does not disclose side effects (e.g., whether toggling is idempotent, what happens if already active, or any impact on ongoing sessions).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: one line for purpose and a bulleted list for arguments. It is appropriately front-loaded with the action. No superfluous words, though the args section could be integrated more naturally.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite having an output schema (not shown), the description fails to mention return values, error conditions, or the overall effect of toggling. For a simple toggle tool, the description is incomplete; it does not convey what happens after activation/deactivation (e.g., context becomes available/unavailable).

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Since input schema descriptions are missing (0% coverage), the description adds meaning: it clarifies 'name' as 'Context name to toggle (must exist in specialist_contexts)' and 'active' as 'True to activate, False to deactivate.' This provides necessary constraints and meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the tool's action: 'Activate or deactivate a specialist context.' The verb 'toggle' is clear, and the resource 'specialist context' is specific. It distinguishes from sibling tools like 'add_specialist_context' (which creates new contexts) and 'get_context' (which reads state).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is provided on when to use this tool versus alternatives like 'add_specialist_context' or 'get_context'. There is no discussion of prerequisites, such as the need for the context to exist, nor any mention of when not to use this tool.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

transcribe_recordingMetis ยท Meeting Memory โ€” Transcribe RecordingA

Transcribe a meeting recording using Whisper.

Optionally applies speaker diarization with pyannote.audio if installed
and HF_TOKEN is set. Saves the transcript alongside the audio file and
updates the meetings table.

Args:
    recording_id: The meeting_id from the meetings table (shown in Meetings tab)

Returns:
    Transcript text (with speaker labels if diarization succeeded) and
    the path where it was saved.
ParametersJSON Schema
NameRequiredDescriptionDefault
recording_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description adequately discloses key behaviors: uses Whisper, optional speaker diarization conditional on dependencies, saves transcript alongside audio, updates meetings table, and returns transcript text and file path. This covers side effects and conditional behavior well.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is brief but complete, using two paragraphs to state the core function and then document parameters and return values. It is efficiently structured without superfluous information, earning a strong score.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (1 parameter, output schema present), the description covers the main functional aspects, optional features, and return structure. Minor omissions like error handling or diarization availability check are acceptable for this complexity level.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description's explanation of the sole parameter 'recording_id' as 'The meeting_id from the meetings table (shown in Meetings tab)' adds essential context beyond the schema's bare 'Recording Id' title, helping the agent know how to obtain the correct value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool transcribes a meeting recording using Whisper, which is a specific verb-resource pair. While it doesn't explicitly differentiate from sibling 'transcribe_voice', the mention of 'meeting recording' and 'meeting_id' makes its purpose distinct enough.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for transcribing meeting recordings with an optional diarization feature, but does not provide explicit guidance on when to use this tool versus alternatives, or when not to use it. The context is clear but exclusions are missing.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

transcribe_voiceMetis โ€” Transcribe VoiceA

Transcribe an audio file or live mic recording and optionally capture the result.

Uses faster-whisper locally โ€” entirely offline, no API calls, no data leaves
your machine. Supports MP3, WAV, M4A, OGG, FLAC, and most other audio formats.

Args:
    audio_path: Path to an audio file to transcribe. Leave empty when using
                record_seconds for live mic capture.
    route_to:   What to do with the transcript after transcription:
                - "raw"     โ†’ return the transcript text only (default)
                - "idea"    โ†’ capture as an idea with cross-pollination
                - "journal" โ†’ add as a journal entry (mood + energy auto-extracted)
                - "note"    โ†’ append to today's voice-notes markdown file
    record_seconds: Seconds to record from the microphone. Requires sounddevice
                    and numpy. Only used when audio_path is empty.
    model_size: faster-whisper model size. Options: "tiny", "base", "small",
                "medium", "large-v3". Defaults to METIS_WHISPER_MODEL env var,
                or "base". Larger models are more accurate but slower to load.

Returns:
    The transcript text and (if routed) confirmation of where it was saved.

Examples:
    transcribe_voice(audio_path="/tmp/idea.m4a", route_to="idea")
    transcribe_voice(audio_path="/tmp/reflection.mp3", route_to="journal")
    transcribe_voice(audio_path="", record_seconds=30, route_to="idea")
    transcribe_voice(audio_path="/tmp/note.wav", route_to="note")
ParametersJSON Schema
NameRequiredDescriptionDefault
route_toNoraw
audio_pathNo
model_sizeNo
record_secondsNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.1/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses offline operation, supported formats, routing behavior, and model size options. It does not mention any destructive side effects, but the 'route_to' parameter implies potential file creation, which is documented.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a summary, a note about offline processing, and a clear Args section. It is somewhat verbose but each sentence adds value. Front-loaded with core purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity of audio transcription and routing, the description covers inputs, outputs, behavior, and constraints. The return value is described, and examples illustrate common usage. No gaps for an AI agent to correctly invoke the tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema coverage, the description provides thorough parameter documentation: each parameter's purpose, options, defaults, and interactions (e.g., record_seconds used only when audio_path empty). This adds significant value beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Transcribe an audio file or live mic recording' with a specific verb and resource. It is distinct enough from siblings like 'transcribe_recording', though it does not explicitly differentiate.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides examples and explains parameters, but lacks explicit when-to-use or when-not-to-use guidance relative to sibling tools. Usage context is implied rather than stated.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

unarchive_projectMetis โ€” Unarchive ProjectC

Restore an archived project to active status.

Args:
    project_id: The project_id to restore.
ParametersJSON Schema
NameRequiredDescriptionDefault
project_idYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

C2.9/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description must disclose behavioral traits such as side effects, permissions needed, or reversibility. It only says 'restore to active status' without warning about potential impacts on files, connections, or other projects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise with no redundant words. However, it is so brief that it sacrifices completeness for brevity, which may leave gaps in understanding.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the existence of an output schema (unseen) and the simplicity of the tool, the description still lacks information about return values, error cases, and its relationship to sibling tools like 'archive_project'. It is too minimal for complete context.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. The parameter 'project_id' is described only as 'The project_id to restore', which adds minimal meaning over the schema's 'Project Id'. No format, source, or validation hints are given.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('Restore') and the resource ('archived project'), making the tool's purpose unambiguous and easily distinguishable from sibling tools like 'archive_project' or 'remove_project'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives, no prerequisites, and no mention of when not to use it. It only states what it does, leaving the agent to infer usage context from the name alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_all_projectsMetis โ€” Update All ProjectsA

Scan all registered project folders for activity. Refreshes CLAUDE.md for each.

Called by the dashboard Update button or on demand.

ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.7/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must fully disclose behavior. It mentions scanning and refreshing but does not clarify if 'refreshing' overwrites data, requires permissions, or has side effects. Critical safety details are missing.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two short sentences, front-loaded with action, no filler. Every sentence earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given no parameters and an existing output schema, description is adequate but lacks mention of performance impact or error scenarios for a bulk operation. Could be more complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

No parameters exist, so baseline is 4. Description adds meaning by specifying 'all registered project folders', which is beyond the empty schema. No further param info needed.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it scans all registered project folders for activity and refreshes CLAUDE.md for each. Verb+resource is specific and distinguishes it from sibling tools like scan_project_folder that operate on single folders.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides context (called by dashboard Update button or on demand) but does not specify when not to use it or suggest alternatives like scanning a single folder. Implied usage is clear but lacks exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_contactMetis โ€” Update ContactA

Add or update a contact record.

Args:
    name: Contact's full name (used as unique key).
    notes: Notes about this contact.
    role: Contact's role or affiliation.
    birthday: Birthday in YYYY-MM-DD format.
ParametersJSON Schema
NameRequiredDescriptionDefault
nameYes
roleNo
notesYes
birthdayNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It mentions 'Add or update' indicating mutation and the unique key constraint, but lacks details on side effects, authorization needs, or response behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a concise docstring with an Args section, no fluff, and every sentence adds value. It is efficiently structured and front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity and presence of an output schema, the description covers essential parameters and usage hints. However, it could mention error cases or confirmation of upsert.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage, but the description adds meaning by clarifying 'name' as unique key, 'notes' as notes, 'role' as role/affiliation, and 'birthday' format (YYYY-MM-DD). This compensates well for the schema gap.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Add or update a contact record,' specifying the action and resource. The tool name 'update_contact' aligns well, and it distinguishes itself from sibling tools like 'get_contacts'.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description notes that 'name' is used as a unique key, providing some usage guidance. However, it does not explicitly state when to use this tool versus alternatives or mention when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_project_memoryMetis โ€” Update Project MemoryA

Append a session summary to a project's history and refresh its prompt memory.

Call this at the end of any work session on a project. The history feeds
into load_project_context() so future sessions automatically know what
happened before.

Args:
    project_id: The project slug.
    what_was_done: 1-3 sentence summary of what was accomplished this session.
    next_steps: Optional: what needs to happen next. Updates the next_step field.
ParametersJSON Schema
NameRequiredDescriptionDefault
next_stepsNo
project_idYes
what_was_doneYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavior. It states it appends to history and updates prompt memory and next_steps. However, it does not explain what 'refresh prompt memory' entails or whether the operation is idempotent, leaving some behavioral ambiguity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise, with no redundant sentences. It uses a clear structure: purpose, usage instruction, then parameter list. The front-loaded purpose immediately conveys the tool's intent.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has 3 parameters and an output schema exists, the description covers the core functionality, usage, and parameter semantics adequately. It lacks details on return values but the output schema fills that gap. Overall, it is sufficiently complete for an AI agent.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so compensation is needed. The description explains 'what_was_done' as a 1-3 sentence summary and 'next_steps' as optional, updating the next_step field. 'project_id' is described as 'The project slug,' which is sufficient. This adds meaning beyond the schema's titles and defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's action: 'Append a session summary to a project's history and refresh its prompt memory.' The verb 'append' and resource 'project history' are specific. Among memory-related siblings, the focus on session summaries at session end differentiates it.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly says 'Call this at the end of any work session on a project,' providing clear when-to-use guidance. It also explains the benefit (feeds into load_project_context), though it does not discuss when not to use or list alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_taskMetis โ€” Update TaskA

Update an existing task โ€” its status, title, owner, notes, due date, or recurrence.

The companion to create_task and get_tasks: use this to mark a task done or
blocked, reschedule it, reassign it, or edit its details. Only the fields you
pass are changed; empty arguments leave the existing value untouched. Marking
a recurring task "done" automatically creates its next occurrence. Find a
task_id with get_tasks; use delete_task to remove a task entirely.

Args:
    task_id: ID of the task to update (as shown by get_tasks). Required.
    status: New status โ€” "open", "done", or "blocked". Empty = unchanged.
    title: New title. Empty = unchanged.
    owner: New owner. Empty = unchanged.
    notes: New notes/details. Empty = unchanged.
    due_date: New due date in "YYYY-MM-DD" format. Empty = unchanged.
    recurrence: New repeat โ€” "daily", "weekly", "monthly", or "yearly".
        Empty = unchanged; pass "none" to clear an existing recurrence.

Returns:
    A confirmation listing the changed fields (and the next-occurrence id if a
    recurring task was completed), or a note if the task_id was not found.
ParametersJSON Schema
NameRequiredDescriptionDefault
notesNo
ownerNo
titleNo
statusNo
task_idYes
due_dateNo
recurrenceNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.7/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Discloses that only passed fields are changed, empty arguments leave values untouched. Specifies that marking a recurring task 'done' creates next occurrence. Mentions return confirmation or not-found note. No annotations provided, so description carries full burden.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with a brief purpose sentence, companion context, and bullet-like Args. Slightly lengthy but front-loaded and organized. Could be a bit more concise.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Covers all needed context: how to get task_id (get_tasks), what outputs (confirmation or not-found note), behavior of partial updates and recurrence. Given no annotations and 7 parameters, the description is complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates fully with an Args section explaining each parameter: task_id required, status options, title, owner, notes, due_date format, recurrence options and 'none' to clear. Adds meaning beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Update an existing task' with specific fields (status, title, owner, notes, due date, recurrence). It distinguishes itself from sibling tools like create_task, get_tasks, and delete_task.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly identifies as companion to create_task and get_tasks, and tells when to use: mark done/blocked, reschedule, reassign, edit. Also mentions delete_task for removal, providing clear alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_thinking_profileMetis โ€” Update Thinking ProfileA

Recompute and update the thinking profile from the last 90 days of events.

Computes:
- connection_preferences: acted-on rates per domain_pair (source_type)
- preferred_idea_sources: frequency of source_type in high-rated idea events
- agent_feedback: accepted/flagged rates per agent_slug

Writes updated system/thinking-profile.yaml. Safe to call multiple times.
ParametersJSON Schema
NameRequiredDescriptionDefault

No parameters

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.2/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Without annotations, the description discloses the key behavioral trait: it writes to system/thinking-profile.yaml. It also notes safety for repeated calls, indicating no destructive side effects. The mutation is clear, and no contradictory information is present.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise: two short paragraphs, first stating purpose, second listing computed fields in a bullet-like style. No unnecessary words, and the key information is front-loaded.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite having an output schema (not shown but signaled), the description does not mention what the tool returns (e.g., success message or updated profile). However, the computed fields are well-described. A brief note on return value would improve completeness.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema is empty (0 parameters), so schema coverage is 100%. The description adds meaning by explaining what the tool computes, but does not need to elaborate on parameters. Baseline is 4 because no parameter documentation is required.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool recomputes and updates the thinking profile from the last 90 days of events, listing three computed components (connection_preferences, preferred_idea_sources, agent_feedback). This distinguishes it from siblings like get_thinking_profile (read-only) and reset_thinking_profile (reset to default).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description says 'Safe to call multiple times,' implying idempotent usage, but does not explicitly state when to use this tool vs alternatives (e.g., reset_thinking_profile, get_thinking_profile). Guidance is minimal and implicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

update_today_boardMetis ยท News Radar โ€” Update Today BoardA

Fill a Today-surface board (Events or Funding) with items you found on the web.

Use this after web-searching for the researcher's field. The Events board holds
upcoming scientific congresses/conferences/symposia; the Funding board holds open
or upcoming research funding calls, grants and fellowships. These boards have no
RSS source, so this tool is how Claude Desktop (on the user's subscription, no API
rate limit) keeps them current โ€” the dashboard's "Update with Claude" buttons open
a chat that calls this tool.

Replaces the previously tool-filled rows on that board; items the user curated or
added by hand are preserved.

Args:
    board: "events" or "funding".
    items: list of objects, each {"title": str, "url": str, "date": str (optional,
        event date or application deadline), "description": str (optional, one short
        sentence)}. Only include real items with a working http(s) URL.

Returns:
    dict: {ok, board, saved} on success, or {ok: False, error} on failure.
ParametersJSON Schema
NameRequiredDescriptionDefault
boardYes
itemsYes

TDQS

A4.4/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It clearly states that previously tool-filled rows are replaced while user-curated or hand-added items are preserved. It also mentions the absence of an RSS source and that the tool is designed for Claude Desktop on the user's subscription (no API rate limit), providing key operational context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-organized with clear sections, including a purpose statement, usage context, behavioral note, and structured parameter definitions. It is concise yet comprehensive, with every sentence serving a purpose. Minor redundancy exists (e.g., 'on the user's subscription, no API rate limit' could be integrated more smoothly), but overall it is efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the absence of annotations and output schema, the description adequately covers the tool's purpose, parameters, return format, and behavioral traits. It explains the niche use case (boards without RSS, desktop-only update method) and the replacement logic. The return value is described concisely, though it could be slightly more detailed about failure modes. Nonetheless, it is sufficiently complete for an AI agent to use the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, so the description must compensate fully. It does so by defining the 'board' parameter as either 'events' or 'funding', and detailing the 'items' parameter as a list of objects with specified fields (title, url, optional date, optional description). It also includes usage guidance like 'Only include real items with a working http(s) URL', adding crucial semantic value beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description explicitly states the tool fills a Today-surface board (Events or Funding) with web-found items, precisely defining each board's content (congresses/conferences vs. funding calls). It distinguishes itself from sibling tools by specifying the unique use case (boards without RSS sources) and the replacement behavior (preserving manual entries).

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description advises using this tool after web-searching for the researcher's field and explains that it is invoked via the dashboard's 'Update with Claude' buttons. While it does not explicitly list when not to use or enumerate alternatives, the context is clear enough for an AI agent to infer appropriate usage scenarios.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

validate_pipeline_stageMetis ยท Data Guardian โ€” Validate Pipeline StageA

M5.7.4 โ€” Validate a sub-agent output before passing to the next pipeline stage.

Treats sub-agent output with the same suspicion as external tool output.
Rejects if any required keys are missing or empty.

Args:
    output_json: JSON string of the sub-agent output dict.
    required_keys: Comma-separated list of required keys (e.g., "title,summary,agent_slug").
ParametersJSON Schema
NameRequiredDescriptionDefault
output_jsonYes
required_keysYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses that it rejects missing or empty keys and treats output with suspicion. However, it does not state whether the tool is read-only or has side effects, but the validation action implies no mutation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is appropriately concise with a clear first sentence followed by a brief explanation and Args section. The inclusion of version number 'M5.7.4' is minor noise but does not detract significantly.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description does not need to detail return values. It covers the tool's purpose, parameter semantics, and validation behavior, making it reasonably complete for a simple validation tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description compensates by explaining both parameters: output_json is a JSON string of the sub-agent output dict, and required_keys is a comma-separated list. This adds meaning beyond the schema types.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it validates a sub-agent output before passing to the next pipeline stage, using specific verb 'validate' and resource 'pipeline stage'. It distinguishes from siblings by focusing on validation between stages, which is unique among the listed tools.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly says to use it before passing output to the next stage and treats output with suspicion like external tool output. It does not mention when not to use or list alternatives, but the context is clear.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

verify_backupMetis โ€” Verify BackupA

Run SQLite integrity_check on a backup file.

Args:
    backup_path: Full path to an unencrypted .sqlite backup.

Returns JSON with status ('ok' or errors) and table count.
ParametersJSON Schema
NameRequiredDescriptionDefault
backup_pathYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.8/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must fully disclose behavioral traits. It mentions the operation (integrity_check) and output format but does not explicitly state that the tool is non-destructive or safe to run. Missing details on error handling (e.g., if file is missing or encrypted).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise: three sentences with no filler. It front-loads the core action and includes necessary parameter details. Every sentence is informative.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's low complexity (one parameter, simple output), the description covers the main behavior and output shape. It could be improved by mentioning what happens on errors (e.g., file not found, corrupted), but the core integrity_check behavior is adequately described.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0%, but the description adds significant meaning by specifying 'Full path to an unencrypted .sqlite backup.' This clarifies the parameter's type, format, and secrecy requirement, compensating for the schema's lack of description.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool runs SQLite integrity_check on a backup file, specifying the exact action and resource. Among siblings like backup_db, restore_db, and list_backups, it is distinctly focused on verification.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies use for verifying backup integrity but does not explicitly state when to use versus alternatives or provide exclusions. No mention of prerequisites (e.g., file must already exist) or when not to use.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

write_reflexionMetis โ€” Write ReflexionA

Stage 11: Record an agent self-critique entry to the reflexion_log.

Called at the end of every agent run to capture experience: what worked,
what could be better, what context was missing, what tools were needed.
Entries are reviewed by the weekly Coach loop for self-improvement proposals.

Args:
    session_id: Pipeline session ID from session_bootstrap().
    agent_slug: Which agent is writing the reflexion (e.g. 'librarian').
    went_well: What went well in this run (1โ€“2 sentences).
    could_improve: What could have been done better (1โ€“2 sentences).
    missing_context: What context or data was unavailable but needed.
    tool_wishes: Tools or capabilities that would have helped.
ParametersJSON Schema
NameRequiredDescriptionDefault
went_wellNo
agent_slugYes
session_idYes
tool_wishesNo
could_improveNo
missing_contextNo

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It describes the tool as a write operation (recording an entry) and provides context about post-processing (review loop). However, it does not specify whether the tool is append-only, if it requires specific permissions, or if there are limits like one entry per run. For a logging tool, this is adequate but not exhaustive.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and well-structured: a purpose header, a contextual paragraph, and a bullet list of parameters. No unnecessary words. Every sentence adds value. The key information is front-loaded, making it easy to scan.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given 6 parameters, 0% schema coverage, no annotations, and the existence of an output schema (not shown), the description covers all parameters and use case. It explains the downstream use (review by Coach loop). It does not explicitly mention return values, but the output schema likely handles that. A minor gap is not stating if the entry is saved immediately or if failure handling exists.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0% (no descriptions in input schema), so the description carries full burden. It lists all 6 parameters with clear explanations: session_id is 'Pipeline session ID from session_bootstrap()', agent_slug is 'Which agent is writing the reflexion', and the three optional text fields are described with their 1-2 sentence length guideline. This adds substantial meaning beyond the bare schema titles.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The tool's purpose is clearly stated: 'Record an agent self-critique entry to the reflexion_log'. It specifies it is called at the end of every agent run to capture experience. This verb+resource combination distinguishes it from sibling tools like log_agent_run or add_journal_entry, which serve different logging purposes.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly states when to use the tool: 'Called at the end of every agent run'. It also explains the downstream use: entries are reviewed by the weekly Coach loop for self-improvement. While it doesn't explicitly list when not to use it or compare with alternatives, the context is clear enough for an agent to decide.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

write_user_configMetis โ€” Write User ConfigA

Write the full user-config.yaml produced by the first-run config wizard.

Merges the provided YAML into the existing config so that specialist_contexts
and active_contexts set by earlier tools are preserved.

Args:
    yaml_content: Complete YAML string as produced by the wizard (all sections).
ParametersJSON Schema
NameRequiredDescriptionDefault
yaml_contentYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

A3.6/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description must fully disclose behavior. It describes the merge behavior and preservation of specialist_contexts and active_contexts, but does not mention permissions, error handling, side effects, or what happens if the config does not exist.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences plus an Args section, efficiently conveying purpose and key behavior. It is front-loaded with the main action. Could be slightly more structured, but overall concise.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has one parameter and an output schema exists, the description covers the core functionality and parameter meaning. However, it lacks context about prerequisites (e.g., wizard must have run) and does not differentiate usage from similar write tools like write_user_preferences.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has 0% description coverage for the parameter. The description's Args section adds meaning by specifying that yaml_content should be 'Complete YAML string as produced by the wizard (all sections)', but does not provide format constraints, size limits, or examples.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'Write' and the resource 'the full user-config.yaml produced by the first-run config wizard'. It distinguishes from siblings like 'get_user_config' (read) and 'write_user_preferences' (partial write) by specifying it writes the complete config.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies the tool is used after the first-run config wizard and mentions merging behavior, but does not explicitly state when to use this tool versus alternatives like 'write_user_preferences' or provide any when-not-to-use guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

write_user_preferencesMetis โ€” Write User PreferencesB

Write user-preferences.json produced by the first-run config wizard.

Merges the provided JSON into any existing preferences so incremental wizard
saves do not overwrite earlier sections.

Args:
    json_content: JSON string with preference keys (news_topics, journals,
                  pubmed_query, openalex_query, theme, density, etc.).
ParametersJSON Schema
NameRequiredDescriptionDefault
json_contentYes

Output Schema

ParametersJSON Schema
NameRequiredDescription
resultYes

TDQS

B3.2/5.0
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. Mentions merge behavior but omits important details: idempotency, error handling, authentication needs, return value. Output schema exists but description doesn't reference it or clarify what the tool returns.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Brief two-paragraph structure: purpose sentence, merge explanation, then args list. No wasted words. The args section could be integrated more seamlessly but overall efficient.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, output schema exists), the description is adequate but not thorough. It explains the merge behavior and gives key examples, but lacks error handling, format spec, or return value description.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With schema description coverage at 0%, the description adds value by listing example preference keys (news_topics, journals, etc.). However, it does not specify required JSON format (e.g., escaping, allowed types), leaving some ambiguity.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it writes user-preferences.json produced by the first-run config wizard. Specifies merge behavior to avoid overwriting earlier sections. Does not explicitly differentiate from sibling tool write_user_config, which might have overlapping purpose.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Describes use case (first-run config wizard, incremental saves) but provides no guidance on when not to use it or alternatives like write_user_config. Lacks explicit exclusions.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. 17 tool updatesv0.1.4
    • Addedanalyze_script
    • Addedconsolidate_old_memories
    • Addedevaluate_against_layers
    • Addedgenerate_profiling_script
    • Addedget_related_memories
    • Addedingest_profiling_output
    • Addedkg_index_memory
    • Addedkg_memory_connections
    • Addedlink_memories
    • Addedrecall
    • Addedrecall_decisions
    • Addedrecord_decision
    • Addedrecord_routing_preference
    • Addedreindex_memory
    • Addedremember
    • Addedscan_project_scripts
    • Addedupdate_today_board
  2. 24 tool updatesv0.1.2
    • Addedaggregate_reflexions
    • Removedaggregate_reflexions_tool
    • Addedapply_proposal
    • Removedapply_proposal_tool
    • Changedclean_dataset1 field changed
      • addedInput schema / properties / authorized
        Added value: +{
        +  "default": false,
        +  "title": "Authorized",
        +  "type": "boolean"
        +}
    • Addedconsolidate_reflexions
    • Removedconsolidate_reflexions_tool
    • Addeddelete_task
    • Addeddraft_self_improvement_proposal
    • Removeddraft_self_improvement_proposal_tool
    • Addedexport_knowledge_markdown
    • Addedfind_tools
    • Addedgenerate_handoff_brief
    • Removedgenerate_handoff_brief_tool
    • Addedget_memory_health
    • Addedlist_tool_groups
    • Addedload_tool_group
    • Removedmemory_health_report
    • Addedredact_data_file
    • Addedsave_daily_brief
    • Addedscan_outgoing
    • Addedsearch_semantic_scholar
    • Addedsync_zotero_local
    • Addedupdate_task
  3. 185 tool updatesv0.1.0
    • First observed_obsidian_vault
    • First observedadd_glossary_term
    • First observedadd_journal_entry
    • First observedadd_memory_entry
    • First observedadd_specialist_context
    • First observedadd_tracked_file
    • First observedadd_user_topic
    • First observedaggregate_reflexions_tool
    • First observedanonymize_text
    • First observedapply_proposal_tool
    • First observedapprove_proposal
    • First observedarchive_library_item
    • First observedarchive_project
    • First observedask_library
    • First observedassemble_brainstorm_context
    • First observedbackup_db
    • First observedbrainstorm_turn
    • First observedbuild_pdf_knowledge_db
    • First observedcapture_idea
    • First observedcapture_observation
    • First observedcheck_data_safety
    • First observedclean_dataset
    • First observedcommit_session_decisions
    • First observedcompare_profiles
    • First observedconfigure_library_provider
    • First observedconnect_project_folder
    • First observedconsolidate_reflexions_tool
    • First observedconsolidate_session_memory
    • First observedcreate_knowledge_database
    • First observedcreate_project
    • First observedcreate_project_full
    • First observedcreate_task
    • First observedcross_pollinate
    • First observeddaily_note
    • First observeddecrypt_backup
    • First observeddetect_projects
    • First observeddhis2_metadata
    • First observeddhis2_query
    • First observeddiff_anonymization
    • First observeddiscovery_intro
    • First observeddiscovery_status
    • First observeddraft_self_improvement_proposal_tool
    • First observedencrypt_backup
    • First observedend_span
    • First observedenrich_meeting_with_crossrefs
    • First observedexport_citations
    • First observedextract_structured
    • First observedfind_connections
    • First observedfull_scan
    • First observedgenerate_daily_insight
    • First observedgenerate_handoff_brief_tool
    • First observedgenerate_image
    • First observedget_agent_context
    • First observedget_agent_runs
    • First observedget_backup_schedule
    • First observedget_brainstorm_session
    • First observedget_consent_ledger
    • First observedget_constitution
    • First observedget_contacts
    • First observedget_context
    • First observedget_course_status
    • First observedget_daily_insight
    • First observedget_glossary
    • First observedget_ideas
    • First observedget_journal
    • First observedget_library_stats
    • First observedget_network_policy
    • First observedget_new_publications
    • First observedget_news_briefs
    • First observedget_pdf_index_stats
    • First observedget_pending_proposals
    • First observedget_project_categories
    • First observedget_project_status
    • First observedget_research_context
    • First observedget_spans
    • First observedget_tasks
    • First observedget_thinking_profile
    • First observedget_topic_memory
    • First observedget_user_config
    • First observedget_user_profile
    • First observedget_user_topics
    • First observedget_working_memory
    • First observedimport_bibtex_library
    • First observedindex_library_pdfs
    • First observedindex_pdf_library
    • First observedingest_ideas_document
    • First observedkg_community
    • First observedkg_paths
    • First observedlink_claude_desktop
    • First observedlist_backups
    • First observedlist_basket
    • First observedlist_brainstorm_sessions
    • First observedlist_contexts
    • First observedlist_folder
    • First observedlist_generated_images
    • First observedlist_knowledge_databases
    • First observedlist_recent_memory
    • First observedlist_recent_sessions
    • First observedlist_research_entities
    • First observedlist_supported_formats
    • First observedload_project_context
    • First observedlog_agent_run
    • First observedlog_consent_event
    • First observedlog_span
    • First observedmark_publications_read
    • First observedmemory_health_report
    • First observedmetis_doctor
    • First observedmine_references
    • First observednext_discovery_tip
    • First observedprobe_tool_result
    • First observedprofile_dataset
    • First observedpromote_basket_item
    • First observedpropose_library_organization
    • First observedpropose_skill_improvement
    • First observedpublish_course
    • First observedquery_research_timeline
    • First observedread_file
    • First observedrecord_dataset_treatment
    • First observedrecord_research_finding
    • First observedrecord_thinking_event
    • First observedregister_code_artifact
    • First observedregister_data_dictionary
    • First observedreject_proposal
    • First observedremove_first_run_marker
    • First observedremove_library_item
    • First observedremove_project
    • First observedremove_tracked_file
    • First observedreset_thinking_profile
    • First observedrestore_db
    • First observedreview_course
    • First observedrun_metis
    • First observedsave_brainstorm_output
    • First observedsave_course_curriculum
    • First observedsave_course_outline
    • First observedsave_course_sources
    • First observedsave_lesson_draft
    • First observedsave_review
    • First observedsave_session_event
    • First observedsave_session_summary
    • First observedscaffold_script
    • First observedscan_folder_for_intent
    • First observedscan_inbox
    • First observedscan_literature
    • First observedscan_news
    • First observedscan_openalex
    • First observedscan_project_folder
    • First observedscan_pubmed_alerts
    • First observedscan_tracked_files
    • First observedsearch_code_repository
    • First observedsearch_fulltext
    • First observedsearch_library
    • First observedsearch_literature
    • First observedsearch_literature_extended
    • First observedsearch_memory
    • First observedsearch_notes
    • First observedsearch_pdf_knowledge
    • First observedsearch_session_memory
    • First observedsemantic_search
    • First observedsession_bootstrap
    • First observedset_backup_schedule
    • First observedset_discovery_tips
    • First observedset_network_policy
    • First observedset_project_category
    • First observedset_working_memory
    • First observedstart_course_build
    • First observedstart_span
    • First observedstore_episodic_memory
    • First observedstore_procedural_memory
    • First observedstore_semantic_memory
    • First observedsuggest_cleaning
    • First observedsurface_relevant_context
    • First observedsync_zotero_library
    • First observedtoggle_context
    • First observedtranscribe_recording
    • First observedtranscribe_voice
    • First observedunarchive_project
    • First observedupdate_all_projects
    • First observedupdate_contact
    • First observedupdate_project_memory
    • First observedupdate_thinking_profile
    • First observedvalidate_pipeline_stage
    • First observedverify_backup
    • First observedwrite_reflexion
    • First observedwrite_user_config
    • First observedwrite_user_preferences

TDQS

A3.5/5.0
Disambiguation2/5

With 196 tools, many have overlapping purposes, such as multiple search tools (search_library, search_literature, search_fulltext, search_pdf_knowledge, semantic_search) and memory tools (store_episodic_memory, store_semantic_memory, store_procedural_memory, add_memory_entry). An agent would struggle to distinguish between them without deep understanding of subtle differences.

Naming Consistency3/5

All tool names use snake_case consistently, but verb patterns vary widely (add_, create_, store_, capture_, save_, record_, log_, write_). Some names are verbose or include prepositions, making the pattern less predictable.

Tool Count1/5

196 tools is far beyond typical scope (3-15). This massive number indicates poor modularity and likely many redundant or overly specialized tools, overwhelming both the agent and the context window.

Completeness4/5

The tool set covers an impressively broad range of research activities: projects, tasks, memory, literature, data cleaning, DHIS2, brainstorming, etc. Minor gaps exist (e.g., no dedicated tool for updating project description), but overall the surface is quite complete.

Maintenance

ActivityActive
ResponsivenessUnresponsive

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