Best PubMed MCP Servers
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics maintained by the United States National Library of Medicine.
Why this server?
Provides access to PubMed molecular hydrogen medical literature with inline safety notes.
AlicenseAqualityDmaintenanceEnables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.637MITWhy this server?
Offers SQL querying of PubMed biomedical literature and citations.

microquery-mcpofficial
AlicenseAqualityDmaintenanceMCP server to ask research questions about real-world datasets and get actual database records back, with auto-registration and trial credit.4MITWhy this server?
Allows searching and fetching articles from PubMed.
AlicenseAqualityDmaintenanceEnables searching and fetching articles from PubMed, a database of biomedical literature.21MITWhy this server?
Provides access to search and retrieve medical literature from PubMed's database of over 30 million citations, including research articles, clinical studies, and medical reviews
AlicenseBqualityFmaintenanceAn MCP server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm.351171111MITWhy this server?
Enables searching of biomedical literature from PubMed database.
AlicenseBqualityDmaintenanceMCP server with 562 tools accessing 114 government data APIs covering economic, health, education, energy, and more from federal, state, and international sources.4100891MITWhy this server?
Provides biomedical literature discovery from a PubMed-derived corpus, including natural language, PMID, DOI, and PMCID search, publication detail retrieval, and traversal of citation and semantic neighborhoods.
AlicenseAqualityAmaintenanceEnables agents to search a public PubMed-derived corpus by natural language or identifiers and to retrieve publication details while traversing bounded citation and semantic literature graphs.7Apache 2.0Why this server?
Provides tools to search academic papers from PubMed, enabling retrieval of biomedical literature.
Why this server?
Fetches PubMed records to cross-reference PDB structures with scientific literature.

io.github.rcsb/rcsb-mcpofficial
AlicenseAqualityBmaintenanceEnables discovery, inspection, and cross-referencing of Protein Data Bank structures through three RCSB APIs: search, data, and sequence coordinates.363MITWhy this server?
Provides search and download capabilities for academic papers from PubMed's database of biomedical literature
AlicenseBqualityDmaintenanceAn MCP server for searching and downloading academic papers from multiple sources including arXiv, PubMed, bioRxiv, and Sci-Hub, designed for seamless integration with large language models like Claude Desktop.795572,564MIT