sci-bot-mcp
Provides tools for retrieving detailed paper metadata by DOI, enabling AI agents to access academic paper details using Digital Object Identifiers.
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@sci-bot-mcpWhat is the role of AI in drug discovery?"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
sci-bot-mcp
mcp config:
command: python args: server.py env: DEEPSEEK_API_KEY
Available Tools
3 toolsask_research_questionA
Ask a research question and get an AI-generated answer with real paper citations.
Searches academic papers and uses an LLM to synthesize an answer with proper citations [1][2][3].
Args: question: Your research question (e.g. "What are the latest CRISPR clinical applications?") num_references: Number of reference papers to use (default 8, max 15)
Returns: A well-structured answer with inline citations and a reference list with DOIs.
| Name | Required | Description | Default |
|---|---|---|---|
| question | Yes | ||
| num_references | No |
Output Schema
| Name | Required | Description |
|---|---|---|
| result | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
With no annotations provided, the description carries the full burden. It transparently describes the process: searches academic papers, uses an LLM to synthesize, and provides citations. It implies a read-only query operation, though it does not mention specific limits or auth requirements. No contradictions.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is highly concise, with a clear opening sentence, a one-line explanation of the process, and well-structured args and returns sections. Every sentence adds value, and the format is easy to parse.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Given the tool's low complexity, the description covers the essential aspects: what it does, how it processes, the output format. It mentions return values (answer with citations and DOIs), which compensates for the lack of visible output schema. Slightly more detail on edge cases or limitations would push it to 5.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema description coverage is 0%, so the description must compensate. It explains the 'question' parameter with an example and clarifies 'num_references' with default (8) and max (15), adding meaning beyond the schema's type and constraints.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description clearly states the tool asks a research question and gets an AI-generated answer with citations. It distinguishes from siblings like search_papers (which returns papers) and get_paper_details (which gives details). The verb 'ask' and resource 'research question' are specific and clear.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description explains when to use the tool (to ask a research question) and provides an example. It does not explicitly state when not to use it or mention alternatives, but the context of siblings implies its unique role in synthesizing answers rather than just searching or retrieving details.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_paper_detailsA
Get detailed information about a specific paper by its DOI.
Args: doi: The DOI of the paper (e.g. "10.1038/nature14539")
Returns: Detailed paper info including full abstract, all authors, journal, and citation count.
| Name | Required | Description | Default |
|---|---|---|---|
| doi | Yes |
Output Schema
| Name | Required | Description |
|---|---|---|
| result | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
The description lists return fields (abstract, authors, journal, citation count) but does not clarify side effects, authorization needs, or rate limits. Since no annotations are provided, the description carries the full burden but only partially meets it.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is extremely concise with clear sections for Args and Returns. Every sentence is necessary and adds value, with no redundancy.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Given the tool's simplicity (one parameter, output schema present), the description covers purpose, parameter format, and return values adequately. No missing information for an agent to use it correctly.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The input schema only defines doi as a required string with no description. The description adds a clear explanation and an example ('10.1038/nature14539'), significantly improving parameter understanding despite 0% schema coverage.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description clearly states the tool retrieves detailed information about a specific paper by DOI, which distinguishes it from sibling tools 'ask_research_question' and 'search_papers' that serve different purposes.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description implies using the tool when you have a DOI and want details, but does not explicitly state when to use it over alternatives or provide exclusion criteria. It lacks guidance on when not to use it.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
search_papersA
Search 200M+ academic papers using CrossRef API.
Args: query: Search query (e.g. "CRISPR gene editing", "transformer attention mechanism") limit: Number of results to return (default 8, max 20)
Returns: List of papers with title, authors, year, citation count, DOI, and abstract.
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| limit | No |
Output Schema
| Name | Required | Description |
|---|---|---|
| result | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
No annotations are provided, so the description must disclose behavior. It mentions the API source (CrossRef), the maximum limit (20), and return fields. However, it lacks details on rate limits, pagination, error handling, or ordering of results.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is extremely concise, using a clear 'Args' and 'Returns' structure. No unnecessary words; every sentence adds value. It is front-loaded with the purpose.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Given the tool's simplicity (2 params, no nested objects, no annotations), the description covers the main aspects: purpose, usage, parameters, and return format. Minor omission: no guidance on handling large result sets or network issues.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Despite 0% schema coverage (meaning the description doesn't repeat schema), the description adds value with examples for query and clarifies limit's default (8) and maximum (20), which are not in the schema. This compensates well.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description clearly states the tool's function: 'Search 200M+ academic papers using CrossRef API.' It uses a specific verb (search) and resource (academic papers), and the sibling tools (ask_research_question, get_paper_details) are distinct, so there is no confusion.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description provides example queries, which implicitly guide usage, but it does not explicitly state when to use this tool versus its siblings (e.g., for broad search vs. retrieving details). No 'when not to use' or alternative guidance is given.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
Tool Schema Changelog
Recent tool additions, removals, and schema changes observed during successful MCP inspections. Dates show when Glama detected each change.
3 tool updates
v0.1.0- First observed
ask_research_question - First observed
get_paper_details - First observed
search_papers
TDQS
Each tool has a clearly distinct purpose: asking a research question, fetching paper details by DOI, and searching papers. There is no ambiguity or overlap.
All tools follow a consistent verb_noun pattern in snake_case: ask_research_question, get_paper_details, search_papers.
Three tools is on the lower end but still appropriate for a focused research assistant. Each tool serves a core function without unnecessary bloat.
Covers the main research workflow: search, details, and Q&A. Missing features like citation export or recommendations, but the surface is reasonably complete for its scope.
Maintenance
Resources
Unclaimed servers have limited discoverability.
Looking for Admin?
If you are the server author, to access and configure the admin panel.
Related MCP Connectors
Academic research MCP server for paper search, citation checks, graphs, and deep research.
Driflyte MCP server which lets AI assistants query topic-specific knowledge from web and GitHub.
The only MCP server for Arabic academic research — search, read & cite Arabic + English papers.
Related MCP Servers
- AlicenseAqualityDmaintenanceMCP server enabling AI agents to search and retrieve scientific papers, citations, and author profiles from Crossref, OpenAlex, and Semantic Scholar with no API keys required.53MIT
- AlicenseAqualityBmaintenanceAn intelligent research assistant MCP server for AI agents, providing task-oriented literature search and analysis across multiple academic databases.4627Apache 2.0
- FlicenseNot gradedqualityDmaintenanceAn advanced scholarly research MCP server that enables AI assistants to discover, fetch, process, and manage academic papers across multiple sources like arXiv, PubMed, and Semantic Scholar, with capabilities for summarization, citation analysis, and concept relationship extraction.2-
- AlicenseAqualityDmaintenanceAI-powered academic paper search MCP server with relevance scoring, summarization, author search, and credit checking. Enables users to search papers naturally and get scored results.350MIT
Latest Blog Posts
- Who's Calling? MCP Hosts Are an Identity Blind Spot (And the Spec Knows It)By Om-Shree-0709 on .mcpAgent IdentityOAuth 2.1
- Your AI Chatbot Just Exposed Your CEO's Salary to an InternBy Om-Shree-0709 on .Agent IdentityMCP SecurityOAuth Delegation
- Why MCP Servers Need Execution Sandboxing (And Why Your Current Stack Isn't Enough)By Om-Shree-0709 on .Agentic AiPrompt InjectionWebAssembly
MCP directory API
We provide all the information about MCP servers via our MCP API.
curl -X GET 'https://glama.ai/api/mcp/v1/servers/lnkvv210-eng/sci-bot-mcp'
If you have feedback or need assistance with the MCP directory API, please join our Discord server