Noodle Biomedical Literature Discovery MCP
Server Details
Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.
- Status
- Healthy
- Last Tested
- Transport
- Streamable HTTP
- URL
- Repository
- helena-bioinformatics/noodle-mcp
- GitHub Stars
- 0
- Server Listing
- Noodle Biomedical Literature Discovery MCP
Available Tools
7 toolsget_corpus_summaryGet corpus summaryARead-onlyIdempotentInspect
Return public corpus coverage, source, freshness, and count metadata. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
Output Schema
| Name | Required | Description |
|---|---|---|
| scope | Yes | |
| counts | Yes | |
| sources | Yes | |
| generated_at | Yes | |
| contract_version | Yes | |
| deduplication_keys | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already declare readOnlyHint=true, idempotentHint=true, and destructiveHint=false, covering the essential behavioral traits. The description adds only the purpose caveat, not new behavioral context like return format or rate limits. Since annotations are strong, a neutral score is appropriate.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Two short sentences with no filler. The main action and metadata list are front-loaded, and the use-case caveat is a single clause. Every word earns its place.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
With no parameters and an output schema present, the description sufficiently conveys what the tool does, what it returns, and its intended use. Nothing needed for correct invocation or interpretation is missing.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The tool has zero parameters, so the description has nothing to add. Per the rubric, 0 params earns a baseline of 4. The description correctly omits any parameter details since none exist.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
Clear verb 'Return' plus specific resource 'corpus summary' and the exact metadata types (coverage, source, freshness, count). It clearly distinguishes itself from siblings which are about individual publications/works, and includes the intended use case in the second sentence.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
Provides the general purpose ('literature discovery and professional review') and a restriction ('not diagnosis or treatment'), but does not explicitly contrast with sibling tools or state when to choose this over get_publication_details or search_biomedical_literature. The usage context is implied by the resource, but not explicit exclusions are given.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_publication_detailsGet publication details by PMIDARead-onlyIdempotentInspect
Retrieve one complete public bibliographic record by PMID after search. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
| pmid | Yes | One PubMed identifier to look up in Noodle's current public corpus, as 1 to 12 digits without a PMID prefix. |
Output Schema
| Name | Required | Description |
|---|---|---|
| publication | Yes | |
| usage_boundary | Yes | |
| contract_version | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already cover read-only, idempotent, non-destructive behavior. The description adds useful context about returning a complete public bibliographic record and the intended literature-discovery purpose, but it does not disclose additional behavioral details beyond those annotations.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Two concise sentences front-load the core action and scope, with the usage caveat kept brief. Every sentence contributes meaningful information without redundancy.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
For a single-parameter, read-only lookup with a full input schema and an output schema present, the description covers what the tool does, when to use it, and its appropriate context. No critical information is missing for correct invocation.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The input schema fully documents the only parameter, pmid, including format and meaning. The description adds no significant parameter-level detail, so baseline 3 is appropriate.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description states a specific verb ('Retrieve'), a specific resource ('one complete public bibliographic record'), and the exact identifier type ('by PMID'). This clearly separates it from sibling search or neighborhood tools, which have different scopes.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The phrase 'after search' gives clear context that this tool is used to retrieve details for a PMID already identified via search. It does not explicitly name alternatives or state when not to use it, but the intended usage is reasonably clear.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_publication_neighborhoodExplore a PMID literature neighborhoodBRead-onlyIdempotentInspect
Retrieve the bounded citation and semantic neighborhood around one PMID. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
| pmid | Yes | One PubMed identifier, as 1 to 12 digits. | |
| from_work_id | No | Optional prior work ID for a reversible graph path. |
Output Schema
| Name | Required | Description |
|---|---|---|
| edges | Yes | |
| nodes | Yes | |
| freshness | Yes | |
| anchor_pmid | No | |
| stale_after | Yes | |
| generated_at | Yes | |
| graph_version | Yes | |
| anchor_node_id | Yes | |
| anchor_work_id | No | |
| policy_version | Yes | |
| usage_boundary | Yes | |
| release_channel | Yes | |
| contract_version | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already declare readOnlyHint, idempotentHint, and destructiveHint, covering the safety profile. The description adds useful context like 'bounded neighborhood' and a disclaimer about non-clinical use, which go beyond metadata. However, it does not explain specific behaviors such as pagination or limits, so it provides only moderate added value.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is two concise sentences with no filler. The core action is front-loaded, and the disclaimer is brief. Every word contributes to clarity, making it an exemplar of efficient writing.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
For a read-only tool with an output schema and annotations covering safety, the description provides sufficient context. It states the purpose and the non-clinical usage, which is important. The only gap is the lack of explicit differentiation from get_work_neighborhood, but that falls under usage guidance rather than completeness. Overall, it is well-rounded for the tool's complexity.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema description coverage is 100%, with both pmid and from_work_id fully documented in the schema. The description adds no additional parameter-specific details, so it does not exceed the baseline score for a high-coverage schema. The agent can rely on the schema for parameter meaning.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description uses a specific verb ('Retrieve') and resource ('bounded citation and semantic neighborhood') scoped to one PMID. It clearly identifies the tool's function, but does not explicitly distinguish it from sibling get_work_neighborhood, which is a closely related alternative. The name and title help, but explicit differentiation is absent.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
No guidance is provided on when to use this tool versus alternatives. There is no mention of conditions like 'use for PMID-based exploration' or reference to sibling tools. The description simply states what it does, leaving the agent to infer appropriate usage from context.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_work_detailsGet publication details by work IDARead-onlyIdempotentInspect
Retrieve one complete public bibliographic record by Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
| work_id | Yes | Canonical Noodle Literature Corpus work identifier. |
Output Schema
| Name | Required | Description |
|---|---|---|
| publication | Yes | |
| usage_boundary | Yes | |
| contract_version | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already declare readOnlyHint=true, idempotentHint=true, and destructiveHint=false, covering safety. The description adds value by specifying the record is 'complete' and 'public', and by adding the non-diagnostic disclaimer—context beyond the structured fields.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Two sentences with no redundancy; the primary action and scope are front-loaded, followed by a brief application note. Every sentence earns its place.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
With an output schema present and annotations covering safety, the description is complete for the tool's simple purpose. The only gap is lack of sibling differentiation, but given low complexity and available structured data, the provided text is sufficient.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema coverage is 100% (the lone work_id parameter has a clear description: 'Canonical Noodle Literature Corpus work identifier'). The tool description adds no new semantics for the parameter, just restates the identifier concept—appropriate given high coverage, but not additive.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description clearly states a specific verb ('Retrieve') and resource ('one complete public bibliographic record') keyed by a Noodle work identifier. It does not explicitly differentiate from sibling tools like get_publication_details, but the single-record-by-ID focus is unambiguous.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description includes a usage disclaimer ('for literature discovery and professional review, not diagnosis or treatment') which implies appropriate contexts, but there is no explicit guidance on when to choose this tool over siblings or when not to use it. The use case is only implied.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
get_work_neighborhoodExplore a work literature neighborhoodARead-onlyIdempotentInspect
Retrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
| work_id | Yes | Canonical work identifier to place at the graph center. | |
| from_work_id | No | Optional prior work ID for a reversible graph path. |
Output Schema
| Name | Required | Description |
|---|---|---|
| edges | Yes | |
| nodes | Yes | |
| freshness | Yes | |
| anchor_pmid | No | |
| stale_after | Yes | |
| generated_at | Yes | |
| graph_version | Yes | |
| anchor_node_id | Yes | |
| anchor_work_id | No | |
| policy_version | Yes | |
| usage_boundary | Yes | |
| release_channel | Yes | |
| contract_version | Yes |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already cover read-only, idempotent, non-destructive behavior, lowering the burden. The description adds meaningful context by describing the result as 'bounded' and clarifying that it is for discovery/review rather than clinical use. It does not describe pagination or limits, but the output schema covers return structure and the annotations cover safety traits.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
The description is two sentences with no filler. It front-loads the core action, states the scope, and adds a relevant boundary about appropriate use. Every sentence earns its place.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
For a read-only, idempotent retrieval tool with one required parameter and an existing output schema, the description is largely complete. It covers the purpose, scope, and appropriate-use boundary. The main gap is the absence of an explicit routing cue to sibling tools, but that gap is modest given the schema and annotations.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
The input schema provides 100% parameter coverage, including descriptions for work_id and from_work_id, so the description adds little new parameter-level meaning. It only reinforces that the tool centers on 'one Noodle work identifier,' which is already in the schema. Baseline 3 is appropriate.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description states a clear action ('Retrieve the bounded citation and semantic neighborhood') and a specific resource ('one Noodle work identifier'). It distinguishes the tool from detail/search siblings by focusing on neighborhood retrieval, though it does not explicitly name the distinction from get_publication_neighborhood.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description gives useful context ('for literature discovery and professional review') and an exclusion ('not diagnosis or treatment'), so an agent can infer appropriate situations. However, it does not explicitly say when to use this tool versus get_publication_neighborhood, get_work_details, or search_biomedical_literature.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
search_biomedical_literatureSearch biomedical literatureARead-onlyIdempotentInspect
Semantically search Noodle's public PubMed-derived biomedical corpus. Include known PMID, DOI, or PMCID identifiers in the query so they can act as exact anchors. Results are for literature discovery and professional review, not diagnosis or treatment.
| Name | Required | Description | Default |
|---|---|---|---|
| sort | No | Result ordering: relevance-ranked, newest publication first, or oldest publication first. | relevance |
| limit | No | Maximum number of publications to return, from 1 to 25. | |
| query | Yes | Natural-language literature question or exact PMID, DOI, PMCID, gene, variant, phenotype, HPO, or OMIM query. Include every known publication identifier when comparing or finding related papers. | |
| cursor | No | Opaque continuation cursor from the preceding response for the same query and sort order; omit for the first page. |
Output Schema
| Name | Required | Description |
|---|---|---|
| query | Yes | |
| results | Yes | |
| has_more | No | |
| graph_used | No | |
| next_cursor | No | |
| graph_version | No | |
| returned_count | Yes | |
| usage_boundary | Yes | |
| contract_version | Yes | |
| searchable_fields | Yes | |
| semantic_index_used | No | |
| graph_degraded_reason | No | |
| semantic_degraded_reason | No |
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
The description adds behavioral context beyond the annotations: the corpus is public and PubMed-derived, the search is semantic rather than keyword-only, identifiers anchor results, and results are not suitable for medical decisions. The readOnlyHint, idempotentHint, and destructiveHint are not contradicted.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Three front-loaded, purposeful sentences with no filler: the first states what the tool does, the second gives query-construction guidance, and the third sets scope/limitations. Every sentence earns its place.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
Given the annotations, full schema coverage, and presence of an output schema, the description covers all essential operational context: corpus scope, semantic-search behavior, identifier-anchoring strategy, and intended use limitations. Nothing an agent needs to call this tool correctly is missing.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Schema coverage is 100%, so the baseline is 3. The description adds value beyond the schema by telling agents to include known identifiers in the query as 'exact anchors,' which clarifies effective use of the query parameter. Other parameters (sort, limit, cursor) are already well documented in the schema.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
The description uses a specific verb and resource: 'Semantically search Noodle's public PubMed-derived biomedical corpus.' This clearly differentiates the tool from siblings like get_publication_details or get_corpus_summary, which retrieve specific entities or summaries rather than perform corpus-wide semantic search.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description gives explicit query guidance: include known PMID, DOI, or PMCID identifiers so they can act as exact anchors. It also states the appropriate context ('literature discovery and professional review') and excludes diagnosis or treatment, providing clear usage boundaries without naming sibling alternatives.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
support_helenaSupport Helena's free scientific infrastructureARead-onlyIdempotentInspect
Learn about the separate Helena Good MCP. This opt-in information action initiates no payment or outreach and changes no scientific result.
| Name | Required | Description | Default |
|---|---|---|---|
No parameters | |||
Output Schema
| Name | Required | Description |
|---|---|---|
No output parameters | ||
TDQS
Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?
Annotations already declare readOnlyHint, idempotentHint, and destructiveHint false; the description adds genuinely valuable reassurance that invoking the tool 'initiates no payment or outreach and changes no scientific result.' That guards against an agent wrongly assuming the 'Support' title triggers a donation. No contradiction with annotations.
Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.
Is the description appropriately sized, front-loaded, and free of redundancy?
Two tight sentences, both earning their place: the first front-loads the core purpose, the second removes any misconception about payment/outreach. Only minor loss — it is terse on what the Helena Good MCP is — keeps it from a 5.
Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.
Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?
For a parameterless tool that has its own output schema, the description gives the agent everything needed to safely invoke it: read-only, idempotent, and side-effect free. There is no critical missing detail for correct invocation.
Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.
Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?
Tool has zero parameters, so the 100% coverage baseline (score 4) applies; there is nothing for the description to explain about params. It correctly focuses on the action's semantics and lack of side effects instead.
Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.
Does the description clearly state what the tool does and how it differs from similar tools?
Delivers a specific verb ('Learn about') and resource ('the separate Helena Good MCP'), and clarifies the action is purely informational — which sets it apart from the sibling data-retrieval tools. Some vagueness remains about what the Helena Good MCP actually is and what 'support' entails, keeping it from a 5.
Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.
Does the description explain when to use this tool, when not to, or what alternatives exist?
The description only implicitly differentiates this from the sibling data-access tools (get_corpus_summary, search_biomedical_literature, etc.) by labeling itself an information action. It never states explicitly when to reach for it, when not to, or names any alternative as a fallback.
Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.
Tool Schema Changelog
Recent tool additions, removals, and schema changes observed during successful MCP inspections. Dates show when Glama detected each change.
7 tool updates
- First observed
get_corpus_summary - First observed
get_publication_details - First observed
get_publication_neighborhood - First observed
get_work_details - First observed
get_work_neighborhood - First observed
search_biomedical_literature - First observed
support_helena
Frequently Asked Questions
Claiming proves that you control a remote MCP connector. It does not move, proxy, or interrupt the server.
Open the connector listing, choose Claim ownership, and sign in to Glama.
Complete one verification method:
GitHub identity — fastest for official registry listings. For a namespace such as
io.github.alice/server, link the matching GitHub user, then choose Claim with GitHub. An organization namespace such asio.github.acme/serveralso needs that organization to have installed the Glama AI GitHub App and approved its permissions, because GitHub discloses organization membership only to apps it has installed. Use HTTP or DNS when it has not.HTTP challenge — works when you can deploy a public file. Generate a token, publish the exact JSON Glama shows at
/.well-known/glama.jsonon the same origin as the connector, then choose Check HTTP challenge.DNS challenge — works when you control DNS but cannot change the server. Generate a token, create the exact TXT record Glama shows, wait for it to propagate, then choose Check DNS challenge.
After verification, Glama sends a confirmation email and gives you access to listing details, thumbnails, health checks, and analytics. Keep the HTTP file or DNS record in place: Glama periodically checks it and ownership remains verified while the token is discoverable.
The HTTP ownership file has this structure:
{
"$schema": "https://glama.ai/mcp/schemas/connector.json",
"claim": "glama_claim_..."
}Claim tokens are opaque, stable, and bound to the signed-in Glama account. They contain no email address or other personal information. If Glama can no longer discover a verified HTTP or DNS token, it starts a seven-day grace period before removing claim-based access. Restore the same token during that period to keep ownership verified. Never publish an email address, Glama session token, GitHub token, or connector credential as ownership proof.
If verification fails, confirm that you copied the current token exactly. The HTTP file must be public, return valid JSON with a successful HTTP response, and stay on the connector's origin. DNS changes may need more time to propagate. A claim cannot transfer to a different origin or hostname: if the connector target changes, Glama starts the grace period and the new target must be claimed separately after the previous claim is released.
For a connector linked to the official MCP Registry, registry updates continue to replace its name, description, and URL by default. After claiming, open Manage connector and enable Use Glama listing details as the source of truth if edits made on Glama should be preserved. Categories and thumbnails are always managed on Glama; registry linkage and technical connection settings continue to sync.
Control your server's listing on Glama, including description and metadata
Access analytics and receive server usage reports
Get monitoring and health status updates for your server
Feature your server to boost visibility and reach more users
To improve your MCP server's ranking:
Claim ownership of the server listing
Complete the server profile with an accurate description and thumbnail
Provide a test profile so Glama can connect to and evaluate the server
Keep tool definitions clear and complete to earn a high Tool Definition Quality Score (TDQS)
Route real usage through the Glama Gateway; more recorded successful server uses also improve the ranking
For users:
Full audit trail – every tool call is logged with inputs and outputs for compliance and debugging
Granular tool control – enable or disable individual tools per connector to limit what your AI agents can do
Centralized credential management – store and rotate API keys and OAuth tokens in one place
Change alerts – get notified when a connector changes its schema, adds or removes tools, or updates tool definitions, so nothing breaks silently
For server owners:
Proven adoption – public usage metrics on your listing show real-world traction and build trust with prospective users
Tool-level analytics – see which tools are being used most, helping you prioritize development and documentation
Direct user feedback – users can report issues and suggest improvements through the listing, giving you a channel you would not have otherwise
The connector status is unhealthy when Glama is unable to successfully connect to the server. This can happen for several reasons:
The server is experiencing an outage
The URL of the server is wrong
Credentials required to access the server are missing or invalid
If you are the owner of this MCP connector and would like to make modifications to the listing, including providing test credentials for accessing the server, please contact support@glama.ai.
Discussions
No comments yet. Be the first to start the discussion!
Related MCP Connectors
Search biomedical literature, get article details, find related articles, and explore MeSH terms
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms.
Search 36M+ PubMed biomedical articles and ClinicalTrials.gov studies.
Search PubMed with precision using keyword and journal filters and smart sorting. Uncover MeSH ter…
Related MCP Servers
- AlicenseNot gradedqualityCmaintenanceEnables searching and retrieving biomedical literature from PubMed via the NCBI E-utilities API.141MIT
- AlicenseNot gradedqualityCmaintenanceEnables searching and exploring 340 million academic papers from 15+ databases with semantic search, citation graphs, and knowledge graph connections for biomedical entities.1MIT
- AlicenseNot gradedqualityAmaintenanceEnables PubMed literature search, metadata retrieval, BibTeX export, and evidence table generation for biomedical research agents.2MIT
- FlicenseNot gradedqualityDmaintenanceProvides access to NCBI's E-utilities, PubChem, and PMC APIs for searching and retrieving biomedical literature, chemical, and genomic data.-
Glama MCP Gateway
Add one secure layer between your agents and this server.
TDQS
The search and corpus tools are clearly distinct, and the two detail and two neighborhood tools are parallel but differentiated by identifier type (PMID vs. Noodle work ID). The main ambiguity is that get_publication_details and get_work_details both retrieve full records, so agents must understand which identifier they have. support_helena is unrelated but unambiguously separated.
Most tools follow a consistent snake_case get_<resource>_<scope> pattern, and search_biomedical_literature fits the retrieval theme. support_helena is a minor outlier because it uses a different action verb and target, but it does not break the overall naming style.
Seven tools is well-scoped for a read-only literature discovery server: corpus summary, semantic search, two lookup modes, two neighborhood exploration modes, and one support action. The count feels intentional and each tool serves a distinct part of the discovery workflow.
The read-only discovery surface is largely complete with corpus metadata, search, detailed record retrieval, and neighborhood exploration. A minor gap is that direct retrieval is only by PMID or Noodle work ID, not by DOI/PMCID, though search can serve as a workaround.